PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000491.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21972.1 Da PI: 4.3425 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.4e-18 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g+Wv+eIr p++ r r++lg++ tae+Aa+a + a +l+g Itr_sc000491.1_g00012.1 12 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYNTAEKAARAFDVAQFCLRG 61 8*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.48E-30 | 12 | 71 | No hit | No description |
PROSITE profile | PS51032 | 22.418 | 12 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-30 | 12 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-11 | 12 | 61 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-34 | 12 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-21 | 12 | 70 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.4E-10 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-10 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MERNEESPSA VKYKGVRKRK WGKWVSEIRL PNSRERIWLG SYNTAEKAAR AFDVAQFCLR 60 GPTAQLNFPD DPPDVPGWQT FTPPEIQDVA AQYGSDYSRP PPAVGRQEQG NHEEITHVMD 120 LNDTSPSSTS EGAVQMGDID WSFFDALDGA PTCNDFGLFS GDDLYVPPQP QPPPPPSTTD 180 HDNETQFSHP SFLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-16 | 12 | 71 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 19 | KGVRKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00601 | PBM | Transfer from AT1G74930 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019167895.1 | 1e-116 | PREDICTED: ethylene-responsive transcription factor ERF018-like | ||||
TrEMBL | A0A4D8Z4X1 | 4e-59 | A0A4D8Z4X1_SALSN; EREBP-like factor | ||||
STRING | POPTR_0006s23480.1 | 4e-54 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 9e-47 | ERF family protein |