PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000489.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | BES1 | ||||||||
Protein Properties | Length: 164aa MW: 18386.8 Da PI: 9.2644 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 123.9 | 2.1e-38 | 35 | 112 | 3 | 80 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeae 80 + r p+++Er nnk+RER+RRa+a ki+aGLRa+Gny+lpk+aD n+ l A creAGw ve+DGt +++ ++e++ Itr_sc000489.1_g00017.1 35 KYRYPSERERQNNKQRERKRRAVAKKIFAGLRAHGNYQLPKHADSNDLLIAVCREAGWQVEEDGTIFKRVPVVQKETK 112 6799***************************************************************95433332222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.3E-35 | 36 | 117 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MIGESGSKAL RGCIKTTRGP WTVHRTTKNG GVITKYRYPS ERERQNNKQR ERKRRAVAKK 60 IFAGLRAHGN YQLPKHADSN DLLIAVCREA GWQVEEDGTI FKRVPVVQKE TKACEEDEDY 120 CKCEGGGTSS DALEALNHNL KSITTPTAMS SHVEYCDVHL ALKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 5e-14 | 37 | 103 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 5e-14 | 37 | 103 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 5e-14 | 37 | 103 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 5e-14 | 37 | 103 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795965.1 | 3e-54 | PREDICTED: uncharacterized protein LOC104242587 | ||||
TrEMBL | A0A2G2YL37 | 4e-55 | A0A2G2YL37_CAPAN; Uncharacterized protein | ||||
STRING | XP_009795965.1 | 1e-53 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6204 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 2e-17 | BES1 family protein |