PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000485.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 1042aa MW: 113663 Da PI: 5.1923

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000485.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	619	670	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk +gvc+T+LKriCRq+GI+RWP+Rki+++ Itr_sc000485.1_g00013.1 619 AEKHVSLSVLQQYFSGSLKDAAKAIGVCPTTLKRICRQHGISRWPSRKINKV 670 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	604	690	IPR003035	RWP-RK domain
Pfam	PF02042	8.5E-26	623	670	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	7.4E-23	912	987	No hit	No description
SuperFamily	SSF54277	2.47E-20	912	991	No hit	No description
SMART	SM00666	9.6E-21	916	995	IPR000270	PB1 domain
PROSITE profile	PS51745	20.526	916	991	IPR000270	PB1 domain
Pfam	PF00564	4.3E-18	917	989	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1042 aa Download sequence Send to blast
MLTAWNISDL GFNSLANLED NRDNVELEEE KGIGYFEMEG DEFSLDGTKC STADDSFNVT 60 AMDIMNFDAY AGWCNSPATM DQMLASFAFS PLTPVGYTQF DGLNYTEHNN GTFPMMDVAD 120 NIGSSEGGGE KINFQQNDQL TSLVTSTDVN DSVAKAKKNQ GQNCVVDFGS PMILKSPSEP 180 LAEKMLTALG LFKGSSGGGI LAQVWFPMKE GDKFFLSTYE QPFLLDHVLA GYREVSRKFT 240 FDAENKPGSV PGLPGRVFSS RIPEWTSNIA YYREAEYLRI HHAVNHEVRG SIALPVFEDD 300 QVETPCCAVL EVVTVKEKSD FDSEIEKVCQ ALQAVNLRSI APPSLSPKCL STNQKAALAE 360 ITDVLRAVCH AHRMPLALTW IPCSYVRGDS DDTRRVLCKG WIGNSTEKCV LCIESTACYI 420 SDKEMVGFVH ACTEHYLEEG QGIAGKALQS NHPFFYPDVK EYHISEYPLA HHARKFGLNA 480 AVAIRLRSTF TGNADYILEF FLPVNMKGST EQQLLLNNLS GTMQRICKTL RTVSDAELKG 540 GDGSKFGLQN ASNASIPNLP PFTLSRRNSQ HSLLDSTLDP TDEMHLNVSG SESSGTGADG 600 THQEKTGPRR QMEKKRSTAE KHVSLSVLQQ YFSGSLKDAA KAIGVCPTTL KRICRQHGIS 660 RWPSRKINKV SRSLKKIQTV LESVQGVEGG LKFDPTTGGL LAAGSIIQVP CKEVSKDKDS 720 LIQDAAQPAS CFDGGSPIIK MEEDCSVAGN QLPPSNLLRP SSYKGEHKST SPLSECCYDS 780 KLAALDAGPS WPACLNTIPW TGSGNAALDS SLIKGSSSRW GLNNSNLKSE NSDSPFVSQW 840 SSSMVVGDET ETKMKSANQV AGDDGIGEHN QPASSSMTDS SNGSGSMMNG SSSSSPSFGE 900 PKHLKTEVNC GDSGSKITVK ATYKEDTVRF KFDSSAGCSR LYEEVARRFQ LQNGTFQLKY 960 LDDEEEWVML VSDADLQECI EILDFLGTRT IVSGREDSPL DARKTAIRSP RSSGILLLMH 1020 FAAVDLGLKI HLVLFVETIC FT

Sequence ? help Back to Top

Protein Sequence Length: 1042 aa Download sequence Send to blast

MLTAWNISDL GFNSLANLED NRDNVELEEE KGIGYFEMEG DEFSLDGTKC STADDSFNVT  60
AMDIMNFDAY AGWCNSPATM DQMLASFAFS PLTPVGYTQF DGLNYTEHNN GTFPMMDVAD  120
NIGSSEGGGE KINFQQNDQL TSLVTSTDVN DSVAKAKKNQ GQNCVVDFGS PMILKSPSEP  180
LAEKMLTALG LFKGSSGGGI LAQVWFPMKE GDKFFLSTYE QPFLLDHVLA GYREVSRKFT  240
FDAENKPGSV PGLPGRVFSS RIPEWTSNIA YYREAEYLRI HHAVNHEVRG SIALPVFEDD  300
QVETPCCAVL EVVTVKEKSD FDSEIEKVCQ ALQAVNLRSI APPSLSPKCL STNQKAALAE  360
ITDVLRAVCH AHRMPLALTW IPCSYVRGDS DDTRRVLCKG WIGNSTEKCV LCIESTACYI  420
SDKEMVGFVH ACTEHYLEEG QGIAGKALQS NHPFFYPDVK EYHISEYPLA HHARKFGLNA  480
AVAIRLRSTF TGNADYILEF FLPVNMKGST EQQLLLNNLS GTMQRICKTL RTVSDAELKG  540
GDGSKFGLQN ASNASIPNLP PFTLSRRNSQ HSLLDSTLDP TDEMHLNVSG SESSGTGADG  600
THQEKTGPRR QMEKKRSTAE KHVSLSVLQQ YFSGSLKDAA KAIGVCPTTL KRICRQHGIS  660
RWPSRKINKV SRSLKKIQTV LESVQGVEGG LKFDPTTGGL LAAGSIIQVP CKEVSKDKDS  720
LIQDAAQPAS CFDGGSPIIK MEEDCSVAGN QLPPSNLLRP SSYKGEHKST SPLSECCYDS  780
KLAALDAGPS WPACLNTIPW TGSGNAALDS SLIKGSSSRW GLNNSNLKSE NSDSPFVSQW  840
SSSMVVGDET ETKMKSANQV AGDDGIGEHN QPASSSMTDS SNGSGSMMNG SSSSSPSFGE  900
PKHLKTEVNC GDSGSKITVK ATYKEDTVRF KFDSSAGCSR LYEEVARRFQ LQNGTFQLKY  960
LDDEEEWVML VSDADLQECI EILDFLGTRT IVSGREDSPL DARKTAIRSP RSSGILLLMH  1020
FAAVDLGLKI HLVLFVETIC FT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168410.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_019168411.1	0.0	PREDICTED: protein NLP9-like
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	A0A1U7XXY1	0.0	A0A1U7XXY1_NICSY; protein NLP9-like
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein