PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000485.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 369aa MW: 40659.1 Da PI: 8.6753 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 40.7 | 8.6e-13 | 195 | 234 | 2 | 41 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGf 41 + +kdr+sk++ +++ RdR vRls ++a++f+d+qd+L Itr_sc000485.1_g00004.1 195 TDQKDRQSKVCIARETRDRCVRLSPNTAIQFYDVQDRLDT 234 568***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08069 | 1.2E-7 | 1 | 30 | IPR012606 | Ribosomal protein S13/S15, N-terminal |
SMART | SM01386 | 0.0012 | 1 | 55 | IPR012606 | Ribosomal protein S13/S15, N-terminal |
Gene3D | G3DSA:2.30.29.30 | 1.0E-6 | 69 | 122 | IPR011993 | PH domain-like |
Pfam | PF03531 | 1.6E-13 | 124 | 184 | IPR024954 | SSRP1 domain |
Pfam | PF03634 | 1.1E-9 | 196 | 233 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 8.752 | 197 | 255 | IPR017887 | Transcription factor TCP subgroup |
Gene3D | G3DSA:3.30.420.10 | 2.1E-6 | 264 | 345 | IPR012337 | Ribonuclease H-like domain |
SuperFamily | SSF53098 | 5.82E-9 | 265 | 347 | IPR012337 | Ribonuclease H-like domain |
CDD | cd06222 | 2.91E-13 | 267 | 367 | No hit | No description |
Pfam | PF13456 | 9.1E-13 | 269 | 368 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGRMESHSKG ISSSALPYKL TPPSWSRSLP KMSKITSVKG VTRSKILRIL KAHGLAPEIL 60 EDLSFVDMTD GHMFNNISLG GYGGTNLGQL KVHAGGILWK RLGGGKAVEV DKSDIAGLTC 120 MKTTFFHNSY GITPKEKQLS VNGKNWGEVD LTGNMLTFLV SSKQVFEISQ ADVSQTHLQA 180 KNDAIGINGC IVCPTDQKDR QSKVCIARET RDRCVRLSPN TAIQFYDVQD RLDTTDPCGI 240 VGMMSFGIIK SGRQSNVLMH FVDGVCIHVD ATVFPNREEG CILAVLHEGD RRYLAAKNGY 300 VKCLQDPTLA EAMAIKEALS WAKGCGWRKV NIYSDCQLVC NMLKSCLPIY SYVGCILRDC 360 LNLKRHFDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4v7e_BN | 1e-15 | 1 | 66 | 1 | 91 | 40S ribosomal protein S15 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1S3X6Y2 | 2e-46 | A0A1S3X6Y2_TOBAC; FACT complex subunit SSRP1 | ||||
TrEMBL | A0A1S4BGW5 | 2e-46 | A0A1S4BGW5_TOBAC; FACT complex subunit SSRP1 | ||||
TrEMBL | A0A1U7YDG5 | 2e-46 | A0A1U7YDG5_NICSY; FACT complex subunit SSRP1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-12 | TCP family protein |