PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000480.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 91aa    MW: 10025.3 Da    PI: 7.5089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000480.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-101866247
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                             g+WT+e  + + +a + + ++   +W+ +a+ +g g+t++++k ++q +
  Itr_sc000480.1_g00001.1 18 GSWTAEQNKEFEKALAVYDKDipdRWSNVAKAVGGGKTAEDVKIHYQLL 66
                             79********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-71669IPR001005SANT/Myb domain
PfamPF002493.8E-81865IPR001005SANT/Myb domain
SuperFamilySSF466896.47E-131874IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-41868IPR009057Homeodomain-like
PROSITE profilePS500906.5971867IPR017877Myb-like domain
CDDcd001671.65E-61967No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASNNAMPSG HGCSSGPGSW TAEQNKEFEK ALAVYDKDIP DRWSNVAKAV GGGKTAEDVK  60
IHYQLLVRDV IYIERGLVPF PDYQKTAWKL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-261286276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165820.12e-53PREDICTED: protein RADIALIS-like 2
SwissprotQ1A1732e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U8FNU67e-32A0A1U8FNU6_CAPAN; Protein RADIALIS-like 6
TrEMBLA0A1U8FNV27e-32A0A1U8FNV2_CAPAN; protein RADIALIS-like 1
STRINGLus100235683e-33(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-28RAD-like 1