PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000469.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 669aa    MW: 75855.1 Da    PI: 9.1976
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000469.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1652.1e-2085185190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdg 74 
                              +fY++YA+  GF+vr s+ kk  r+ge++ + +vCs+eg+++ ++              t++++r+r+++r+gCka+++ kk+  g
  Itr_sc000469.1_g00009.1  85 DFYRTYASLGGFDVRHSTVKKD-RDGEVVLQYLVCSREGYKSVSSVLsniqdgaggdsnTVTKKRRRVSNRVGCKARIVFKKDVGG 169
                              6****************99987.8899**************99887789*********9999************************ PP

                     FAR1  75 kwevtkleleHnHela 90 
                               ++v+ +e+ HnH+l+
  Itr_sc000469.1_g00009.1 170 GYRVNFFEERHNHSLC 185
                              ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1885185IPR004330FAR1 DNA binding domain
PfamPF105512.4E-21277358IPR018289MULE transposase domain
PROSITE profilePS5096610.596491527IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-4499520IPR007527Zinc finger, SWIM-type
SMARTSM005750.0075502529IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MVITPTGGIA IRAASFHFRM YSITIRINSP LSALQDDCDG VMFGDAKVGR VEMSPGLTKY  60
WRPVCDDGSK PGTGQCFETL WQAVDFYRTY ASLGGFDVRH STVKKDRDGE VVLQYLVCSR  120
EGYKSVSSVL SNIQDGAGGD SNTVTKKRRR VSNRVGCKAR IVFKKDVGGG YRVNFFEERH  180
NHSLCSKMFR QFLKVNRKLD FTHQTFLANC AKANIGTSQC FRLCKEFVGG FENVGATSVD  240
FQNHKRDLRA YIEGCDTHFA IGNLSRKREQ CASFYYKYRM VFVPFTGIDN HKRCVTFGAG  300
LLTYEDIPSY VWLLQCLKEA VCHDPSCFVT DQDPAMKTAI TQVYSNARHR YCMWHIMTKV  360
GEKDRWCAVL AEYGLLDHSW FSQLWEACTS WILAYFKDVF LNGMVGTTSS QKDKIASSIQ  420
LKLNADCDGH YLELKTPLLL EQHASVVYTI TVFHEVQKEI YAGCFFRRLV SIKACGDIIT  480
YDIKEDDVRL FTVHYSSTNN SATCSCTKFQ RVGTLCRHIF MVYKDARIDN IPDAYIVGRW  540
TRDGTKTLIN QLWTEIHACV SLAKTDIVRV KQLTQAVRQQ KEAFIKEGDI TTTGNYKNPV  600
IQSFCGPVSP TAISVKPPVV ARNKGSGKRL KGMREKSIME NKKQPRKCRG CDQYVRHNSR  660
SCPVLQGLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196306.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-50FAR1-related sequence 5