PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000460.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 355aa MW: 38991.2 Da PI: 8.3482

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000460.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	7.1e-25	84	128	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Itr_sc000460.1_g00002.1 84 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 128 79****************************************986 PP
2	QLQ	66.1	8.2e-23	23	58	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ Itr_sc000460.1_g00002.1 23 PFTAVQWQELEHQAMIYKYLVAGVPVPPDLVVPIRR 58 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-13	22	58	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.282	23	58	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.2E-17	23	57	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	84	128	IPR014977	WRC domain
Pfam	PF08879	4.2E-21	85	127	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MSGTSTSVSG GGGVGYGYGF RPPFTAVQWQ ELEHQAMIYK YLVAGVPVPP DLVVPIRRSF 60 DALSSRFFHH PTLGYCSYYG KKFDPEPGRC RRTDGKKWRC SKDAYPDSKY CERHMHRGRN 120 RSRKPVESQS ASQPLSTAMS HVTSGSSVTS GSFQSTDRSF QNMPLYSIAN SEGLCYGSPA 180 TATKLQMESA SYGRDNKDFW YTHGMNPNAD EHNFPPETSA SVGSLGMGSN IDSTWPPVQF 240 QVSSSPMLKL KNESLLLGSS SSNVHLPGGV YEPIADATIP KQRQQHCLFG SDINSPGTVK 300 QEQQSMRPFF SEWPATKESW SNLDSDGSNK TQLSISIPVT TSDFPSRNAS SQNDA

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MSGTSTSVSG GGGVGYGYGF RPPFTAVQWQ ELEHQAMIYK YLVAGVPVPP DLVVPIRRSF  60
DALSSRFFHH PTLGYCSYYG KKFDPEPGRC RRTDGKKWRC SKDAYPDSKY CERHMHRGRN  120
RSRKPVESQS ASQPLSTAMS HVTSGSSVTS GSFQSTDRSF QNMPLYSIAN SEGLCYGSPA  180
TATKLQMESA SYGRDNKDFW YTHGMNPNAD EHNFPPETSA SVGSLGMGSN IDSTWPPVQF  240
QVSSSPMLKL KNESLLLGSS SSNVHLPGGV YEPIADATIP KQRQQHCLFG SDINSPGTVK  300
QEQQSMRPFF SEWPATKESW SNLDSDGSNK TQLSISIPVT TSDFPSRNAS SQNDA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152287.1	0.0	PREDICTED: growth-regulating factor 3-like
Refseq	XP_019152288.1	0.0	PREDICTED: growth-regulating factor 3-like
Refseq	XP_019152289.1	0.0	PREDICTED: growth-regulating factor 3-like
Swissprot	Q6AWY6	1e-87	GRF3_ORYSJ; Growth-regulating factor 3
TrEMBL	A0A1S4AZ62	1e-179	A0A1S4AZ62_TOBAC; growth-regulating factor 4-like isoform X2
STRING	XP_009605688.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-51	growth-regulating factor 5