PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000456.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 394aa    MW: 43836.8 Da    PI: 7.0757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000456.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl
  Itr_sc000456.1_g00009.1 14 KGPWSPEEDAKLKDFIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                             79*********************************************97 PP

2Myb_DNA-binding38.13.5e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Itr_sc000456.1_g00009.1  69 GEFSDEEDRIICTLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.585962IPR017930Myb domain
SuperFamilySSF466892.0E-2711109IPR009057Homeodomain-like
SMARTSM007171.0E-121364IPR001005SANT/Myb domain
PfamPF002493.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-241569IPR009057Homeodomain-like
CDDcd001677.85E-101662No hitNo description
PROSITE profilePS5129422.04563117IPR017930Myb domain
SMARTSM007171.7E-1267115IPR001005SANT/Myb domain
PfamPF002495.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2370117IPR009057Homeodomain-like
CDDcd001678.26E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDFIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC TLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
MIFPSSSTGY KRKSPLFPAT TISPSTVVPF QPPPPPPPPQ SIFSLYTPPS IRSPFSTLDS  180
LSPIQHPSFL CDNNNNTISL GAPNNGFHQG QNQGFLNPMQ YTSPANSNPH FLMFGGAAAE  240
PASGSSSSDG SCMKPNQSEI IKQEPDLLGN CFQAQIVSPP TANAFFDDQI QTQTQKFFVD  300
YTHHVPETPP SDEHHFFTNG GHFTNTSTPT TTPPPMNNNN NNNQVQYDLE VVTQLVSSGN  360
NGGHESNNNN DGFYLFNDES KTDHERGMYY YYYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188955.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A1S4C9641e-100A0A1S4C964_TOBAC; transcription factor RAX2-like
STRINGXP_009600706.11e-101(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-79myb domain protein 36