PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000451.1_g00048.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 374aa MW: 42390.4 Da PI: 4.7732

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000451.1_g00048.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.3	2.3e-14	137	221	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ L++a ++ + +r++l+ W+ev+kk+ +e +++r+ +qC+++++ l+k+ykk+k + t ++ +++yf++++ Itr_sc000451.1_g00048.1 137 WSEHETFILLDAWGDRFLKQGRKSLRSEEWQEVAKKVsQESKIKRTDTQCRNRLDTLKKKYKKEKMKLAE-TRSVTGRWVYFRKMD 221 ***********************************88999***********************9.5777889****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-21	136	221	No hit	No description
PROSITE profile	PS50090	6.284	137	194	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	151	208	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MDDTEDDARY PPNTCRANDD YGSSDNQKRP AWSGPDPRHV GDQYGEDEQD DEDSDDEAEY 60 DDNMGNGVQP IVKDEDSDSD DEDDYDTDSG DTQKNQKKRK LKSLLSSYEF VPRAPAAAAG 120 VAPPKPSVGG RNPLADWSEH ETFILLDAWG DRFLKQGRKS LRSEEWQEVA KKVSQESKIK 180 RTDTQCRNRL DTLKKKYKKE KMKLAETRSV TGRWVYFRKM DLLLSSNLPS NQQQGGLSCG 240 VDSGEYVFTN PKSHLSRANE LDEMRDSPGI SVSADAEDNS EGLPPKRTKK VKRGADGSSF 300 KLLADSIHKF SEIYEKIEDS KRQQMLELEK MRMDFHRELE AQKRQILERA KAEIAKIRQG 360 DYEENNGSAE NASG

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MDDTEDDARY PPNTCRANDD YGSSDNQKRP AWSGPDPRHV GDQYGEDEQD DEDSDDEAEY  60
DDNMGNGVQP IVKDEDSDSD DEDDYDTDSG DTQKNQKKRK LKSLLSSYEF VPRAPAAAAG  120
VAPPKPSVGG RNPLADWSEH ETFILLDAWG DRFLKQGRKS LRSEEWQEVA KKVSQESKIK  180
RTDTQCRNRL DTLKKKYKKE KMKLAETRSV TGRWVYFRKM DLLLSSNLPS NQQQGGLSCG  240
VDSGEYVFTN PKSHLSRANE LDEMRDSPGI SVSADAEDNS EGLPPKRTKK VKRGADGSSF  300
KLLADSIHKF SEIYEKIEDS KRQQMLELEK MRMDFHRELE AQKRQILERA KAEIAKIRQG  360
DYEENNGSAE NASG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019198777.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A068TP07	1e-150	A0A068TP07_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400080593	1e-146	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-61	Trihelix family protein