PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000449.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 1183aa MW: 132026 Da PI: 8.7686

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000449.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	45	78	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W +eE +++da +++G++ Wk++a+ + +R+ Itr_sc000449.1_g00017.1 45 QWNKEELGRFYDAYRKYGKD-WKKVAAAVR-NRSVD 78 6***************99.*******.99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.51E-9	38	89	IPR009057	Homeodomain-like
Pfam	PF00249	6.3E-6	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	5.30E-4	46	80	No hit	No description
Pfam	PF06584	2.0E-31	629	729	IPR033471	DIRP domain
SMART	SM01135	2.6E-55	629	730	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1183 aa Download sequence Send to blast
MSPARKSRSV NKRYSCVNEV SPNKDGDSSK RSNQRKRKLS MLGPQWNKEE LGRFYDAYRK 60 YGKDWKKVAA AVRNRSVDMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH YCNLAGSDSE 120 QESNEGAGTS QKPQKRARGK VQAGTSKGSD LQTPTVAPNY GCLSLLKKKR TGGTRPRVVG 180 KRTPRFPVSY SYENFNSGKY FSSSRQGLKR KLDANDDEVA HEIALALAEA SQRGGSPQVS 240 QTPTRRTDSA LSTPARNAEK KHVNLEMANS KLLSSEMDED EGSMEADTGE VSRNRTLLET 300 GRTMQKGRRL SGGKLEIDDT GDNHFDDIKE ACSGTEEGYR LGAVKGKHDK EVAGERGSRA 360 SSLGLRKRSK KVLFQRDESS AFDALQTLAD LSLMMPATEN ENDLMMQVKD ENDHIDESGT 420 LEALPTNRQR EKRGSSGVKT KWSQPASRLE VASSTMPKHG KASVDTSSVP ETKQTKKTQK 480 ILTSKARKAE AHLTNDISEP QDFETKDAPK KPSGKGKRSL QSSSPKLIKN QDHSSSADLR 540 IERSDSAQSI AEVPVANQVT LPTKVRSRRK MGIKKPQKEK DLTFPDSILD NNCNLPFASV 600 NDKLFNLKKK LSSCLSNDRV RRWCIYEWFY SAIDYPWFAK REFVEYLYHV GLGHVPRLTR 660 VEWDVIRSSL GKPRRFSEQF LKEEKEKLSQ YREFVRTHYT ELREGTREGL PTDLARPICV 720 GQRVIAIHPK TREVHDGSVL TVDYSRCRVQ FDRPELGVEF VNDIDCMPLN PNENMPALLR 780 RNGHAVDKLY ENFNEHKVNE QANDSVKYAS RDNLENGDGF PCLPSSTYAK NNLLMQTEVD 840 SANVDGHAKI GSSETAQQMS HSQPGTVGQN QAKEADVQAL AKLTRALDKK EAVISELRRM 900 NDDVLENQKS GDCTLKDSEP FRKQYAAVIV QLNEVSSALY CLRQRNTYQG SISLNWPRPV 960 ANFGDSGGIV STFDCYTNQT QEPGSHINEI IESSKIKART MVDAAVQAMS SLNGVENSTG 1020 DVEDAIDYLN DRIPLDESCL LTIPDSKLKN PVHGNEADIP SELITQCVAT LLMIQVKSSG 1080 HFTPSFPAFN SMYANKMMIT FNFQVPLERL MLLDVTTQSD LTWHLSQSQK CTERQFPPAD 1140 VAKILDSAVA SLQPSCSHNL PLYAEIEKCM GIIRTQILAL IPT

Sequence ? help Back to Top

Protein Sequence Length: 1183 aa Download sequence Send to blast

MSPARKSRSV NKRYSCVNEV SPNKDGDSSK RSNQRKRKLS MLGPQWNKEE LGRFYDAYRK  60
YGKDWKKVAA AVRNRSVDMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH YCNLAGSDSE  120
QESNEGAGTS QKPQKRARGK VQAGTSKGSD LQTPTVAPNY GCLSLLKKKR TGGTRPRVVG  180
KRTPRFPVSY SYENFNSGKY FSSSRQGLKR KLDANDDEVA HEIALALAEA SQRGGSPQVS  240
QTPTRRTDSA LSTPARNAEK KHVNLEMANS KLLSSEMDED EGSMEADTGE VSRNRTLLET  300
GRTMQKGRRL SGGKLEIDDT GDNHFDDIKE ACSGTEEGYR LGAVKGKHDK EVAGERGSRA  360
SSLGLRKRSK KVLFQRDESS AFDALQTLAD LSLMMPATEN ENDLMMQVKD ENDHIDESGT  420
LEALPTNRQR EKRGSSGVKT KWSQPASRLE VASSTMPKHG KASVDTSSVP ETKQTKKTQK  480
ILTSKARKAE AHLTNDISEP QDFETKDAPK KPSGKGKRSL QSSSPKLIKN QDHSSSADLR  540
IERSDSAQSI AEVPVANQVT LPTKVRSRRK MGIKKPQKEK DLTFPDSILD NNCNLPFASV  600
NDKLFNLKKK LSSCLSNDRV RRWCIYEWFY SAIDYPWFAK REFVEYLYHV GLGHVPRLTR  660
VEWDVIRSSL GKPRRFSEQF LKEEKEKLSQ YREFVRTHYT ELREGTREGL PTDLARPICV  720
GQRVIAIHPK TREVHDGSVL TVDYSRCRVQ FDRPELGVEF VNDIDCMPLN PNENMPALLR  780
RNGHAVDKLY ENFNEHKVNE QANDSVKYAS RDNLENGDGF PCLPSSTYAK NNLLMQTEVD  840
SANVDGHAKI GSSETAQQMS HSQPGTVGQN QAKEADVQAL AKLTRALDKK EAVISELRRM  900
NDDVLENQKS GDCTLKDSEP FRKQYAAVIV QLNEVSSALY CLRQRNTYQG SISLNWPRPV  960
ANFGDSGGIV STFDCYTNQT QEPGSHINEI IESSKIKART MVDAAVQAMS SLNGVENSTG  1020
DVEDAIDYLN DRIPLDESCL LTIPDSKLKN PVHGNEADIP SELITQCVAT LLMIQVKSSG  1080
HFTPSFPAFN SMYANKMMIT FNFQVPLERL MLLDVTTQSD LTWHLSQSQK CTERQFPPAD  1140
VAKILDSAVA SLQPSCSHNL PLYAEIEKCM GIIRTQILAL IPT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174612.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like
TrEMBL	A0A484MLR9	0.0	A0A484MLR9_9ASTE; Uncharacterized protein
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding