PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000448.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 135aa    MW: 15559.5 Da    PI: 7.5382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000448.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-09750344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              WT +E+  +  a   +  g   +Wk Ia+ ++ g+++k++k+++
  Itr_sc000448.1_g00009.1  7 TWTWDEERMFQIALSTYVEGtpnRWKEIAKLIP-GKSAKDVKEHY 50
                             7*******9999999998888899*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.532158IPR017930Myb domain
SMARTSM007171.1E-7456IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-7550IPR009057Homeodomain-like
SuperFamilySSF466893.89E-10655IPR009057Homeodomain-like
PfamPF002491.8E-7750IPR001005SANT/Myb domain
CDDcd001671.18E-7750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MANQKATWTW DEERMFQIAL STYVEGTPNR WKEIAKLIPG KSAKDVKEHY PILKANIEAM  60
ESSFTQLQTN TNNDASSSQR REENEEVGSV WDLDELPPAD SLLSRSLARF ILKLNRRPSP  120
VFNRRPGSFF TLSVW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164631.14e-48PREDICTED: dnaJ homolog subfamily C member 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-13RAD-like 1