PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000439.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 397aa    MW: 43940.6 Da    PI: 4.9701
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000439.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.6e-35521442103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k++ +++d++++ +isw ++++sfvv+d+++fa+++Lp++Fkh nf+SFvRQLn+Y F+kv++ +         weF+++ F+
  Itr_sc000439.1_g00016.1  52 FLSKTFAMVDDPNTDAIISWGASKKSFVVWDPHRFATELLPQHFKHANFSSFVRQLNTYKFRKVDSGR---------WEFANEGFQ 128
                              9********************999****************************************9988.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              kgkk+ll++ikr++++
  Itr_sc000439.1_g00016.1 129 KGKKHLLKYIKRRRQH 144
                              *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3748141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5548141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3349141IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-165275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-1690102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-16103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MVAESSGIDG GGGGVTVKVE AEVVVVDECD GGGNGGLRLM EGVKGVGGPA PFLSKTFAMV  60
DDPNTDAIIS WGASKKSFVV WDPHRFATEL LPQHFKHANF SSFVRQLNTY KFRKVDSGRW  120
EFANEGFQKG KKHLLKYIKR RRQHNHPAMQ QQGGVENRVG ACKNGAEVEL NKLRTDQSTL  180
KTEVMMLKQQ QETTESYLAS IKEKLERAET RQKRMVVFMA KVLKNPLFVQ CLIGKMKQNA  240
ALRGCEATKK RRLAASESLE LLAKARSTTD DMVITTANES VDVKPLVSQA WVDDESGVPM  300
LFNAGESNSS VEEQQANVFS EASNPDMNSE NFFAWEKLME EEEDMIYDNI VTAEHQSNIV  360
YELEDMLAGD LVEQDNCPGS VPQAICSEES SVGSLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-223514110129Heat shock factor protein 1
5d5v_B9e-223514110129Heat shock factor protein 1
5d5v_D9e-223514110129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140LKYIKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192499.10.0PREDICTED: heat shock factor protein HSF30-like isoform X1
TrEMBLA0A1S4CRR31e-114A0A1S4CRR3_TOBAC; heat stress transcription factor A-7a-like
STRINGXP_009606363.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-68heat shock transcription factor A2