PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000424.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 289aa    MW: 32095.3 Da    PI: 6.35
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000424.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l+  ++q+G+g +W + ++++g++R++k+c++rw++yl
  Itr_sc000424.1_g00001.1 14 KGPWSAEEDAKLKAFIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                             79*********************************************97 PP
2Myb_DNA-binding38.82.2e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Itr_sc000424.1_g00001.1  69 GGFSEEEDKIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.336962IPR017930Myb domain
SuperFamilySSF466891.84E-2611109IPR009057Homeodomain-like
SMARTSM007179.1E-131364IPR001005SANT/Myb domain
PfamPF002496.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-241569IPR009057Homeodomain-like
CDDcd001671.17E-91662No hitNo description
PROSITE profilePS5129420.81663117IPR017930Myb domain
SMARTSM007173.7E-1167115IPR001005SANT/Myb domain
PfamPF002495.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2370117IPR009057Homeodomain-like
CDDcd001674.03E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRSPCCDKN NVKKGPWSAE EDAKLKAFIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDKIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK  120
QVNDHGHSLI RTNQRSNLQP EMVSCGPASS PNNINIYQNP SCPELVPVAM QPIPYPKEEL  180
GFKDPTHLTD TLPVVNSILS STGECTMEDC LINQMVYNVN PQNLEGVEFL CDNIFYNWKD  240
GSSSSSAGGL DWNEINEIQS LVPSPPSPLA SSYEGLEPVG NSVQLPAFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156074.10.0PREDICTED: transcription factor MYB36-like
TrEMBLA0A2I4FQA67e-88A0A2I4FQA6_JUGRE; transcription factor RAX3-like isoform X2
STRINGcassava4.1_011054m3e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-77myb domain protein 36