PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000420.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 567aa    MW: 61539 Da    PI: 8.3034
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000420.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.3e-10190230545
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                              k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Itr_sc000420.1_g00009.1 190 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 230
                              7889************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-8186249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438188232IPR004827Basic-leucine zipper domain
CDDcd147081.36E-24190242No hitNo description
PfamPF001709.9E-7190230IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-6190233No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-7191235No hitNo description
PROSITE patternPS000360193208IPR004827Basic-leucine zipper domain
PfamPF141443.6E-32273345IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGSNTRLNVG GEVNRSSPAG MPSFISQTPL SNPMGTEGNT AHTSQVSDFG VLEQYLGFRI  60
GDGANVNQSN LFNSMPASNP SLVAGGSGIL NKAIASSNAS LPAAAPGSLA LQLQKGPQTN  120
QVPLSGANHE IWAERNMADS SSRTDTSSDM DGDDRNQQQF FTLQFDMGQS IAAVASDSSD  180
RSKEKNLDQK TLRRLAQNRE AARKSRLRKK AYVQQLENSR LKLTQLEQEL QRARQQGVYI  240
SSMGDQSHGT GTNGALTFNV EYARWLEEQN KRVNELRAAV NAHASDTELR TIVDNVTAHF  300
DEVFKLKGNA AKSDVFHVLS GMWKSPAERC FMWIGGFRPS ELLKVTLALS PHINIAYKYA  360
VSSASLDWLT FIDVSYSYQL LANQLEPLTE QQMAGLYKLQ QSSHQAEDAI SQGMEALQQS  420
LAETLANGAS VPDGSSGNVA NYMGQMAMAM GKLGGQLEAT DIAANAPCIN YQTGQFQRVA  480
NVGTVKGECN YARDQAFITT SKVIARSEDA TLFSNTVTFS RGRVLDLPLH GPPGWLGLKM  540
NTPSQKRHLK KTLNRSGGNL SLCLIFP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162483.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like
RefseqXP_019162484.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like
RefseqXP_019162485.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like
RefseqXP_019162486.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like
RefseqXP_019162487.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A484MQI40.0A0A484MQI4_9ASTE; Uncharacterized protein
STRINGXP_009759888.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.31e-114TGACG motif-binding factor 6