PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000418.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 395aa MW: 42829.7 Da PI: 5.1326

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000418.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	297	337	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Itr_sc000418.1_g00013.1 297 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 337 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.332	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-14	293	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	294	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-12	296	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-5	297	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.03E-5	310	342	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MDIFDWDDEP FHVGGSSSAT TGITAMVVGQ AKPQVEELAP APFDPIHMVS SWNLPERQEA 60 AARLAADSMA ARQGWSDAAA IDGSGMCASG RDVLNRSGYV LNQGSGGLMG GDFCNFQAKA 120 PAAGSQLDSF DCLLSATNSN TDTSVEDDEI SMIFSADCKS LWNFNTGNAV SSGESACLEE 180 TVAKSATISD TINCSNLLGK RANPDPSNFN LIPENTQTKS KKSRQENPRP SSSNINFQQP 240 SSSASSVEEP DSEAIAQMKE MIYRAAAFRP VNFGAEAVEK PKRKNVRIST DPQTVAARQR 300 RERISERIRV LQRLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALEAFGQK IDSSSSSLNF 360 NHFIPPSLPF NNYSFPMQPN NLPLYNPNPI HRPRS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MDIFDWDDEP FHVGGSSSAT TGITAMVVGQ AKPQVEELAP APFDPIHMVS SWNLPERQEA  60
AARLAADSMA ARQGWSDAAA IDGSGMCASG RDVLNRSGYV LNQGSGGLMG GDFCNFQAKA  120
PAAGSQLDSF DCLLSATNSN TDTSVEDDEI SMIFSADCKS LWNFNTGNAV SSGESACLEE  180
TVAKSATISD TINCSNLLGK RANPDPSNFN LIPENTQTKS KKSRQENPRP SSSNINFQQP  240
SSSASSVEEP DSEAIAQMKE MIYRAAAFRP VNFGAEAVEK PKRKNVRIST DPQTVAARQR  300
RERISERIRV LQRLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALEAFGQK IDSSSSSLNF  360
NHFIPPSLPF NNYSFPMQPN NLPLYNPNPI HRPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	302	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196248.1	0.0	PREDICTED: transcription factor bHLH87
Refseq	XP_019196249.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	4e-80	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A3Q7FX64	1e-109	A0A3Q7FX64_SOLLC; Uncharacterized protein
STRING	Solyc03g121240.1.1	1e-109	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]