PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000412.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 25693.4 Da PI: 9.1208

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000412.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.8	9.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gkl+e++s Itr_sc000412.1_g00003.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLFEFCS 59 79***********************************************96 PP
2	K-box	93.3	4e-31	80	171	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 +++++++ ++e+ kLk+++e Lqr+qR+llGedL++Ls+keL qLe+q+e+sl++iRs+K++ +++q+ elq+ke +l ++n+ L Itr_sc000412.1_g00003.1 80 ANQSNTQDNYHEYLKLKAKVELLQRSQRNLLGEDLGPLSIKELGQLEHQVESSLSQIRSTKTQSMMNQLVELQQKELALVDANNLL 165 578899****************************************************************************** PP K-box 95 rkklee 100 ++klee Itr_sc000412.1_g00003.1 166 KMKLEE 171 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.151	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-41	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.10E-43	2	78	No hit	No description
SuperFamily	SSF55455	1.44E-34	2	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.8E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-32	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.3E-25	81	169	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.7	85	175	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLFEFCSS 60 SSMMKTLEKY HRCNYASLEA NQSNTQDNYH EYLKLKAKVE LLQRSQRNLL GEDLGPLSIK 120 ELGQLEHQVE SSLSQIRSTK TQSMMNQLVE LQQKELALVD ANNLLKMKLE ERTAATIHQQ 180 PAIGFFQPVG VNSTTSQLGF HHVGSDEINA EVSSAHNING FIPGWML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	2e-23	90	169	22	101	Developmental protein SEPALLATA 3
4ox0_B	2e-23	90	169	22	101	Developmental protein SEPALLATA 3
4ox0_C	2e-23	90	169	22	101	Developmental protein SEPALLATA 3
4ox0_D	2e-23	90	169	22	101	Developmental protein SEPALLATA 3
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019153096.1	1e-162	PREDICTED: MADS-box protein CMB1-like
Swissprot	Q7Y040	1e-112	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	A0A314KKR2	1e-111	A0A314KKR2_NICAT; Developmental protein sepallata 1
STRING	Solyc03g114840.2.1	1e-110	(Solanum lycopersicum)
STRING	XP_009788128.1	1e-110	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-89	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]