PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000399.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 369aa    MW: 40818.7 Da    PI: 4.3268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000399.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20109159155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+ +GVr++k +g+W+AeIrd +     + kr++lg+fgtaeeA +a++  r+++e 
  Itr_sc000399.1_g00014.1 109 SKLRGVRQRK-WGKWAAEIRDpF-----QgKRVWLGTFGTAEEASRAYELKRLEFEE 159
                              789******9.**********55.....45***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.79E-24109150No hitNo description
PfamPF008477.4E-14109159IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-17109160IPR016177DNA-binding domain
PROSITE profilePS5103219.862110169IPR001471AP2/ERF domain
SMARTSM003806.4E-18110173IPR001471AP2/ERF domain
PRINTSPR003671.9E-9111122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-21111163IPR001471AP2/ERF domain
PRINTSPR003671.9E-9133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MLLTNHPTAG RAMKPRAEPG KPMRRIRIVC EDPDATDSSD DERLDVKKPR MFVREILCPM  60
PDSFKNGVKG LEIEGSSSQD SNNEAKRNNL KKKRVLAKTP GQSRPSNPSK LRGVRQRKWG  120
KWAAEIRDPF QGKRVWLGTF GTAEEASRAY ELKRLEFEEA MAKNGINSDK GSDVYVVDNH  180
DINRSGSVVA SDPPCKGKAV VCASEDSVGS LVSHTSPSSV LELESFTSAI ANVKCDNEKT  240
DDDSVEKKMP ELPGTIEDEI LASQLFEMDD KVPDLLEMDG TLPLAQMADD MDLARQLDVA  300
FASDEFAGFD DFGLGDFDDF DLPFCGIDEQ IPTTLPDFDF DFNFDDCNEQ WIDEAPLVPG  360
TTPLNIACP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165027.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_019165028.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_019165029.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A328D3152e-84A0A328D315_9ASTE; Uncharacterized protein
TrEMBLA0A484LQJ52e-84A0A484LQJ5_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-28ERF family protein