PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000395.1_g00041.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 210aa    MW: 23472 Da    PI: 7.258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000395.1_g00041.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.8e-081456344
                             SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrw 44
                              WT  Ed+ + +a  +++ g  +W +Ia++++ g+++ +++ ++
  Itr_sc000395.1_g00041.1 14 TWTRHEDKMFEQALVLFPDGddRWQRIASRIP-GKSALDVIAHF 56
                             5*****************99************.*******9998 PP
2Myb_DNA-binding43.57.2e-14109153347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Itr_sc000395.1_g00041.1 109 PWTEEEHRLFLIGLDRYGKGDWRSISRNVVVTRTPTQVASHAQKY 153
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.6E-71162IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-101371IPR009057Homeodomain-like
PfamPF002493.5E-71456IPR001005SANT/Myb domain
CDDcd001673.90E-81460No hitNo description
PROSITE profilePS500906.2371560IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.9E-41557IPR009057Homeodomain-like
PROSITE profilePS5129421.399102158IPR017930Myb domain
SuperFamilySSF466894.28E-17104159IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16105157IPR006447Myb domain, plants
SMARTSM007172.6E-10106156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-11106152IPR009057Homeodomain-like
PfamPF002498.0E-12109153IPR001005SANT/Myb domain
CDDcd001673.37E-9109153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMGDSVTAMQ SAATWTRHED KMFEQALVLF PDGDDRWQRI ASRIPGKSAL DVIAHFEALV  60
HDVGEIDSGR VELPSYPDDS FGWEQGEPSQ ISFGNSKKQG EAERKKGTPW TEEEHRLFLI  120
GLDRYGKGDW RSISRNVVVT RTPTQVASHA QKYYLRQQSM KKERKRSSIH DITTAVDTKT  180
VPPQTSFANQ GGVGGGGGGY HQNYNFPTQG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181867.11e-142PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-56SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A484KL531e-114A0A484KL53_9ASTE; Uncharacterized protein
STRINGXP_009796939.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.15e-75MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]