PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000394.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 370aa    MW: 40246.6 Da    PI: 5.237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000394.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86e-16120166455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Itr_sc000394.1_g00004.1 120 FHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 166
                              5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-19113174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-20113175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.765116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.37E-18119170No hitNo description
PfamPF000102.2E-13120166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MANAYATTHS SSEPDDIFAF VNQILLRSSS HPPQVLQETQ PYAAVDASSS AAAAFLPSLG  60
YFPVNAAADN VRSSSVGTAE NEPDQYDCES EEGSEAVVEE ASGERARPNR NSKRSRAAEF  120
HNLSEKRRRS RINEKMKALQ NLIPNSNKTD KASMLDEAIE YLKQLQLQVQ MLTIRNGLSL  180
YPMCINGVLN QNQYPIAAMG AYGRNRSPNP NMAGAVHMNQ DAFLNAMFTP SNNGPNPKLT  240
SVATFSNIVS SEASADMESA MQPQLHPFQP PISFKENCRA GILSPEQMDG CHSRTKPIGE  300
NTAPSNPFVT ELSGLRNDTF ESCYLRRNQS DTASYPANVD CSLVIPPQSY SAKAGTSASV  360
DSIKTESSNF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182870.10.0PREDICTED: transcription factor SPATULA
TrEMBLA0A1S3ZJV86e-99A0A1S3ZJV8_TOBAC; transcription factor SPATULA-like isoform X1
TrEMBLA0A1U7WV936e-99A0A1U7WV93_NICSY; transcription factor SPATULA-like isoform X1
STRINGXP_009783822.11e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-37bHLH family protein