PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000384.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 336aa    MW: 36131.1 Da    PI: 5.1981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000384.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-20144193255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Itr_sc000384.1_g00002.1 144 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 193
                              59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.75E-34143203No hitNo description
Gene3DG3DSA:3.30.730.109.8E-33144202IPR001471AP2/ERF domain
PROSITE profilePS5103223.406144201IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-23144202IPR016177DNA-binding domain
SMARTSM003802.5E-39144207IPR001471AP2/ERF domain
PRINTSPR003673.1E-11145156IPR001471AP2/ERF domain
PfamPF008473.3E-14145193IPR001471AP2/ERF domain
PRINTSPR003673.1E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAATIDMWSS LGVDFHSSEP FNGGGDLMDA LEPFISASSS SSPSPSLSSS SSDVFYGSYG  60
SFNGYSGISG CGVGQPGFIG LNPLTPLQVR QIQAQINLQA QQMMGAAPFQ SQWPQQPRRN  120
LSFLAPRPVP MKVAASAPPK PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA  180
ALAYDKAAYK LRGDTARLNF PNLRHNGSLI GGDFGEYKPL HSNVDAKLQA ICQSLAENKS  240
LDSKKSKPAA PPQKPKEEAV EDDKSSVPAE AGPESSGSDS GSSGSVPETY GSDSGSGGSS  300
PVSDLTFPDF TDEESTWDMF SELQKYPSHE IDWASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-21143201160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152692.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like isoform X2
RefseqXP_019152693.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like isoform X3
SwissprotQ8H1E42e-82RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A3S6I5T91e-178A0A3S6I5T9_IPOBA; Ethylene response factor RAP2.4
STRINGXP_009615540.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.19e-58related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]