PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000382.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 383aa    MW: 43531.9 Da    PI: 6.3773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000382.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+eEd++l+d++++ G g+W+t +   g+ R++k+c++rw +yl
  Itr_sc000382.1_g00016.1 14 RGPWTAEEDQKLIDYINKNGYGNWRTLPTNAGLQRCGKSCRLRWMNYL 61
                             89********************************************97 PP
2Myb_DNA-binding537.9e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rgr++ eE+  +++++  lG++ W++Ia++++ gRt++++k++w+++
  Itr_sc000382.1_g00016.1  67 RGRFSSEEEHVIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                              89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.822961IPR017930Myb domain
SuperFamilySSF466897.49E-3111108IPR009057Homeodomain-like
SMARTSM007173.7E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-241568IPR009057Homeodomain-like
CDDcd001675.32E-111661No hitNo description
PROSITE profilePS5129426.06262116IPR017930Myb domain
SMARTSM007173.4E-1466114IPR001005SANT/Myb domain
PfamPF002495.9E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2769116IPR009057Homeodomain-like
CDDcd001672.80E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGRTPCCDKD GLKRGPWTAE EDQKLIDYIN KNGYGNWRTL PTNAGLQRCG KSCRLRWMNY  60
LRPDIKRGRF SSEEEHVIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKKLLRMG  120
IDPVTHRRRV DLLDLSSILN NPSLLYNSRI LGAQTLYNVI NSENANNVVQ DTQQLHAPHP  180
PPLIQDFPVY SPAMAAAQIT QQPNVEFGLE NYTANDFWLG TGLPESEVTQ DYLLPPLQNY  240
GYYEAAVDPQ SAMDPPAPAA DESCRFGFRQ VWSTPSSSQV NSGSTTTTED EREISYGSNL  300
LNFDVGNDST SPSLSLHELA KVATLNELID LVFDEHALVR VIFRLRLEPL NEFIDLVFDE  360
HAHEHARVRV ISRLRLESTV HRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176036.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A328DH061e-108A0A328DH06_9ASTE; Uncharacterized protein
TrEMBLA0A484K7Z61e-108A0A484K7Z6_9ASTE; Uncharacterized protein
STRINGXP_009374421.11e-102(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-90MYB-like 102