PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000381.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 307aa    MW: 35044.3 Da    PI: 5.0896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000381.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l+++++ +G g+W++++++ g+ R++k+c++rw +yl
  Itr_sc000381.1_g00003.1 14 KGLWSPEEDEKLYNYITNFGVGCWSSVPKHAGLQRCGKSCRLRWINYL 61
                             678*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.553965IPR017930Myb domain
SuperFamilySSF466891.56E-2212100IPR009057Homeodomain-like
SMARTSM007172.8E-121363IPR001005SANT/Myb domain
PfamPF002494.3E-151461IPR001005SANT/Myb domain
CDDcd001671.76E-111761No hitNo description
Gene3DG3DSA:1.10.10.604.8E-1665109IPR009057Homeodomain-like
PROSITE profilePS512947.58666108IPR017930Myb domain
SMARTSM007170.4666106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRHSCMVKQ KLRKGLWSPE EDEKLYNYIT NFGVGCWSSV PKHAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDLILS LHEIAAKLPG RTDNEIKNFW NSCLKKKLIK QGIDPNTHKP  120
MAETQDDPKN PTLPTPPNEL PTNFPTTPQM EPSKLPFITT KQIFDPLFLY EPQENLNFPS  180
TYLNPTYAFT SLPGLMNFDT NGQITETDYF SDGSNSRMGS SNSSNNIGAA QMNNNMENGS  240
RFSSWEVGNR MESLFDQYGF SNNGEMIIKP EEEEEERQLI EAHCHDYTLT SLPQDLGGAN  300
LDVFHQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21121085108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154239.10.0PREDICTED: myb-related protein Hv33-like
TrEMBLA0A484N2V01e-115A0A484N2V0_9ASTE; Uncharacterized protein
STRINGXP_004515875.14e-96(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-70myb domain protein 86