PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000380.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 173aa    MW: 20571.5 Da    PI: 8.424
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000380.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.51.4e-132685463
                             XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                             l + r+ ++NR++A+r+R +K  +++e e+kv  L+a  + L+ e+e++k +   l++++
  Itr_sc000380.1_g00009.1 26 LTKLRKTISNRLSAQRCRNKKAHYMQEMEKKVTDLQATISFLRPEIENYKHKKNVLTMQN 85
                             67889*********************************************9888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-131982No hitNo description
SMARTSM003381.2E-112387IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5422588IPR004827Basic-leucine zipper domain
PfamPF001708.1E-112785IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-112882No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAPLTLEQLI KYESSQGRRV DPSMDLTKLR KTISNRLSAQ RCRNKKAHYM QEMEKKVTDL  60
QATISFLRPE IENYKHKKNV LTMQNASLQE QLDSITHISN LLKEEIDGMQ REVQKLKELH  120
DTQKYQKFQL QEYEQEKENR QPILGMTMNQ QDIWGIEPYL NMELWGNSIF NNP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009624616.14e-36(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76151929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.23e-14bZIP family protein