PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000376.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRF | ||||||||
Protein Properties | Length: 601aa MW: 64462.5 Da PI: 8.4883 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 28.8 | 2.2e-09 | 260 | 284 | 21 | 45 |
WRC 21 vlegkklCErHlhrgrsrsrkskee 45 + +++k+CErH++rgr+rsrk++e Itr_sc000376.1_g00011.1 260 AXPDQKYCERHINRGRHRSRKPVEG 284 889*******************985 PP | |||||||
2 | QLQ | 61.2 | 2.8e-21 | 120 | 154 | 1 | 35 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 ++FT++Q+++L++Q+l+yK+++an+P+P++Ll ++ Itr_sc000376.1_g00011.1 120 GPFTPSQWMELEHQALIYKHMVANVPIPSNLLIPL 154 59******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.1E-12 | 120 | 156 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.5E-15 | 121 | 154 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.494 | 121 | 156 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08879 | 7.9E-7 | 258 | 283 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MDFGLMTARQ QSDEPPGAHG SETPAPPSKV PSFLWRSADT VPGKPTMLSF SKSEEEIPFL 60 SSAPAGEDSS KTICFPLFQS HQKRGPHSAA ASSALNLHCS AYAIGGLNES LRGGSARISG 120 PFTPSQWMEL EHQALIYKHM VANVPIPSNL LIPLMKPLNP YAFSGLSPGS YAPNCEFSSQ 180 TSTLDSIRAS KTCFLFWLGG GVHSISVFLQ TLILNPGGVV ELMEKNGGAR EMLFPIRSTV 240 KGTSTEAAIV QESLWKARLA XPDQKYCERH INRGRHRSRK PVEGQTGHAV SGSTTSKVSP 300 IAASSSAPAA SVISCDGTSN SFGAMKHQFN NSKPSPANPS TDHLINNRTQ GHSVISPSFV 360 DLKSKDSTMS IQKQQNPYKE SSQQSGFGFP SSDSVPNPLQ RRPFVNSHNS DTLLDFTGQA 420 SHEQHLVHHF IDGWTKEQSP CAPASWPTEL KSDWTQLSMS IPMASSDFSS SSSSPRQQKP 480 TISPLRLSRE LEPFQMGLGV SNGIAAPIPV AWGNSMGGPL GEVLNNTYTS TGAGKTSPNX 540 XXXXXXXXXX XXXXXXXGKT SPNLNLTTEM WSMGSSPTGV LQKSSFVSLS NSSTASSPQE 600 G |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 2e-45 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 2e-45 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173276.1 | 1e-140 | PREDICTED: growth-regulating factor 1-like | ||||
TrEMBL | A0A1S3XCF0 | 1e-105 | A0A1S3XCF0_TOBAC; growth-regulating factor 1-like | ||||
STRING | XP_009589483.1 | 1e-105 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 7e-35 | growth-regulating factor 1 |