PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000376.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 601aa    MW: 64462.5 Da    PI: 8.4883
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000376.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC28.82.2e-092602842145
                      WRC  21 vlegkklCErHlhrgrsrsrkskee 45 
                              + +++k+CErH++rgr+rsrk++e 
  Itr_sc000376.1_g00011.1 260 AXPDQKYCERHINRGRHRSRKPVEG 284
                              889*******************985 PP

2QLQ61.22.8e-21120154135
                      QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                              ++FT++Q+++L++Q+l+yK+++an+P+P++Ll ++
  Itr_sc000376.1_g00011.1 120 GPFTPSQWMELEHQALIYKHMVANVPIPSNLLIPL 154
                              59******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-12120156IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-15121154IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.494121156IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088797.9E-7258283IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MDFGLMTARQ QSDEPPGAHG SETPAPPSKV PSFLWRSADT VPGKPTMLSF SKSEEEIPFL  60
SSAPAGEDSS KTICFPLFQS HQKRGPHSAA ASSALNLHCS AYAIGGLNES LRGGSARISG  120
PFTPSQWMEL EHQALIYKHM VANVPIPSNL LIPLMKPLNP YAFSGLSPGS YAPNCEFSSQ  180
TSTLDSIRAS KTCFLFWLGG GVHSISVFLQ TLILNPGGVV ELMEKNGGAR EMLFPIRSTV  240
KGTSTEAAIV QESLWKARLA XPDQKYCERH INRGRHRSRK PVEGQTGHAV SGSTTSKVSP  300
IAASSSAPAA SVISCDGTSN SFGAMKHQFN NSKPSPANPS TDHLINNRTQ GHSVISPSFV  360
DLKSKDSTMS IQKQQNPYKE SSQQSGFGFP SSDSVPNPLQ RRPFVNSHNS DTLLDFTGQA  420
SHEQHLVHHF IDGWTKEQSP CAPASWPTEL KSDWTQLSMS IPMASSDFSS SSSSPRQQKP  480
TISPLRLSRE LEPFQMGLGV SNGIAAPIPV AWGNSMGGPL GEVLNNTYTS TGAGKTSPNX  540
XXXXXXXXXX XXXXXXXGKT SPNLNLTTEM WSMGSSPTGV LQKSSFVSLS NSSTASSPQE  600
G
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818752e-45LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132622e-45LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173276.11e-140PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1S3XCF01e-105A0A1S3XCF0_TOBAC; growth-regulating factor 1-like
STRINGXP_009589483.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-35growth-regulating factor 1