PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000372.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 372aa MW: 42625.2 Da PI: 8.7233

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000372.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF r nL+ H r+H Itr_sc000372.1_g00009.1 64 YVCETCNMSFHREQNLQMHRRRH 86 9*********************9 PP
2	zf-C2H2	17	1.7e-05	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk + s++k H++t+ Itr_sc000372.1_g00009.1 152 WVCDKCGKAYAVLSDYKAHLKTC 174 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.88E-6	63	86	No hit	No description
PROSITE profile	PS50157	11.011	64	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0042	64	86	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-4	64	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	66	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	85	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.4E-4	143	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.88E-6	147	172	No hit	No description
SMART	SM00355	49	152	179	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MLPNHSIYLS SSSSSSSPRL NFFSQEISHG CTTTKRKRKP AGTPDPNAQV IYLSPEKLLE 60 SDRYVCETCN MSFHREQNLQ MHRRRHKVPW QPQKAAARST GEGCSPPQEA ARKRVYVCPE 120 PSCVHHDPSH ALGDLVGIKK HFRRKHCDHK EWVCDKCGKA YAVLSDYKAH LKTCGTKGHS 180 CDCGRVFSRV ETFIEHQDSC KPKSFRRERE TPSKSAINLN LMSIEPRIHR TTADFHQYGN 240 NNNNMMIINS FSHHHNHHQK LEELELFPPS NSSKSAMIED EEDASLEALR LKFEAEEMMK 300 VARENKAMAE ERRKEAKYLI EMANQEMAKA RRIREQVWLA DLTTSHLLTD HCSTSSSSSA 360 QIRCNSCAKH LQ

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MLPNHSIYLS SSSSSSSPRL NFFSQEISHG CTTTKRKRKP AGTPDPNAQV IYLSPEKLLE  60
SDRYVCETCN MSFHREQNLQ MHRRRHKVPW QPQKAAARST GEGCSPPQEA ARKRVYVCPE  120
PSCVHHDPSH ALGDLVGIKK HFRRKHCDHK EWVCDKCGKA YAVLSDYKAH LKTCGTKGHS  180
CDCGRVFSRV ETFIEHQDSC KPKSFRRERE TPSKSAINLN LMSIEPRIHR TTADFHQYGN  240
NNNNMMIINS FSHHHNHHQK LEELELFPPS NSSKSAMIED EEDASLEALR LKFEAEEMMK  300
VARENKAMAE ERRKEAKYLI EMANQEMAKA RRIREQVWLA DLTTSHLLTD HCSTSSSSSA  360
QIRCNSCAKH LQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-14	150	200	5	55	Zinc finger protein JACKDAW
5b3h_F	1e-14	150	200	5	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177204.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	2e-95	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A1U7XCC4	1e-116	A0A1U7XCC4_NICSY; protein SHOOT GRAVITROPISM 5-like isoform X1
STRING	XP_009787306.1	1e-117	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	3e-92	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]