PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000370.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 269aa    MW: 30515.1 Da    PI: 8.4403
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000370.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-131057148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+ Ed +l+ +v+++G ++W+  ++  g++R++k+c++rw +yl
  Itr_sc000370.1_g00011.1 10 KGPWTEHEDVQLAFYVNLFGDRRWDFLSKISGLKRSGKSCRLRWVNYL 57
                             79********************************************97 PP
2Myb_DNA-binding56.27.9e-1863106146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg++T+ E+ l+++++ +lG++ W++Iar+++ gRt++++k++w++
  Itr_sc000370.1_g00011.1  63 RGKMTPHEERLILELHSKLGNR-WSKIARKLP-GRTDNEIKNYWRT 106
                              89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.441557IPR017930Myb domain
SuperFamilySSF466894.87E-288104IPR009057Homeodomain-like
SMARTSM007171.5E-10959IPR001005SANT/Myb domain
PfamPF002499.6E-121057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-181164IPR009057Homeodomain-like
CDDcd001671.49E-71257No hitNo description
PROSITE profilePS5129426.26158112IPR017930Myb domain
SMARTSM007171.5E-1662110IPR001005SANT/Myb domain
PfamPF002491.5E-1563106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2465111IPR009057Homeodomain-like
CDDcd001673.06E-1265106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRIVSEEVRK GPWTEHEDVQ LAFYVNLFGD RRWDFLSKIS GLKRSGKSCR LRWVNYLHPG  60
LKRGKMTPHE ERLILELHSK LGNRWSKIAR KLPGRTDNEI KNYWRTQMRK EAHDKKKKDK  120
KQHQKGGGAC SSSASPSLSN SSSSSSGSAG EESTPAPVVG ANERGFYDTG GFVEAPPPPP  180
RADNGEKMGG AGVKVYSMDE IWKAIESPEN QESRHGGMMG SAIWDDYSVW TMDYDYQEDE  240
RNMVAPVCDQ FYTWFDNNLD FAHNTFLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-27211219128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108121RKEAHDKKKKDKKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177398.11e-151PREDICTED: myb-related protein MYBAS2-like isoform X1
SwissprotQ9LX823e-64MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1J6J4581e-81A0A1J6J458_NICAT; Transcription factor myb48
STRINGXP_009770621.12e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-64myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]