PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000364.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 412aa MW: 45676.7 Da PI: 4.7456

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000364.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	113.5	1.3e-35	159	251	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 f rlwse+Dei++L G+id+k+++g++ps+d++af+ef+k+++ +++s++q+ eKirrL+kKf ++ +k g+ p+f+k+hd+k+ Itr_sc000364.1_g00009.1 159 FARLWSEDDEIAVLEGMIDYKNQKGTDPSADLSAFHEFIKGKLRADISRTQMYEKIRRLRKKFFTNIEK---GDTPDFTKPHDHKT 241 89***************************************************************99...********** PP DUF573 89 felskkiWgs 98 fe+skk+Wgs Itr_sc000364.1_g00009.1 242 FEVSKKVWGS 251 ******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.6E-31	159	250	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MAPKSQTRLV DQPPSASSSE DEEESDPEEE TQNSEEESEE EDEAEEEEEQ APVKAPEQAP 60 KKAPSSPPPL SKKPTVEKPQ SSSGSESESD EEGSDSSQHT PDFTIKPNVP SNAPPASKPP 120 AKRPLETPVK ESARKKLKSG EEDGNAEEKK LPGSASAGFA RLWSEDDEIA VLEGMIDYKN 180 QKGTDPSADL SAFHEFIKGK LRADISRTQM YEKIRRLRKK FFTNIEKGDT PDFTKPHDHK 240 TFEVSKKVWG SSAVSNGVNE NTKSPNGKGK KTAEIKKITE PKKGAKVSNF SVTKEEPKKG 300 GKVSDFGVTK EEEKEKPIIT KDKDTGISLK DEGDFKSMYP LLVKSFDKAN MPDLSEGALA 360 IYQENLSLIG SSKAEEFEEQ WTKIYKEEAE LFLKMTDFMG EQVKLIVETI KR

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MAPKSQTRLV DQPPSASSSE DEEESDPEEE TQNSEEESEE EDEAEEEEEQ APVKAPEQAP  60
KKAPSSPPPL SKKPTVEKPQ SSSGSESESD EEGSDSSQHT PDFTIKPNVP SNAPPASKPP  120
AKRPLETPVK ESARKKLKSG EEDGNAEEKK LPGSASAGFA RLWSEDDEIA VLEGMIDYKN  180
QKGTDPSADL SAFHEFIKGK LRADISRTQM YEKIRRLRKK FFTNIEKGDT PDFTKPHDHK  240
TFEVSKKVWG SSAVSNGVNE NTKSPNGKGK KTAEIKKITE PKKGAKVSNF SVTKEEPKKG  300
GKVSDFGVTK EEEKEKPIIT KDKDTGISLK DEGDFKSMYP LLVKSFDKAN MPDLSEGALA  360
IYQENLSLIG SSKAEEFEEQ WTKIYKEEAE LFLKMTDFMG EQVKLIVETI KR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159479.1	0.0	PREDICTED: STOREKEEPER protein-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	5e-27	DNA-binding storekeeper protein-related transcriptional regulator