PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000364.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 442aa    MW: 49111.9 Da    PI: 5.1443
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000364.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.21.7e-90494282373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl.. 83 
                              ++lLl+cA a++++d +laq++++ l++ asp+gdp+qRl++ f++AL +r +r    ++   p++     n  +++ +++++l  
  Itr_sc000364.1_g00007.1  49 EKLLLHCASALEANDVTLAQQVMWVLNNVASPTGDPNQRLTSWFLRALVSRASR----VCPNAPVTGFGAGNgvHTRLMTVTELag 130
                              589***************************************************....4444455555444442444444444588 PP

                     GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLa 166
                              +++v P+++f++ +aN+ Il+av+g++rvHi+Df+i++++QWp+L++aLa+Rp+gpp lRi +++   s+    + + e++g rL+
  Itr_sc000364.1_g00007.1 131 YVDVIPWHRFGFCAANSEILRAVQGQNRVHILDFSITHCMQWPTLIDALAKRPGGPPFLRISVMSGRPSVpplLNASCEQLGVRLS 216
                              ****************************************************************997767899999********** PP

                     GRAS 167 kfAeelgvpfefnvl..............vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                              +fA+  +vpfefnv+              +++  l++l+++ L+++++E+laVn++  l +l+         rd++++++k+l+P 
  Itr_sc000364.1_g00007.1 217 NFAKFRDVPFEFNVIgsesdyihqefpdfHHDfILSCLTPSCLNLREDEVLAVNCQNWLRYLP--------SRDTFIDAIKGLNPS 294
                              *********************999999986666899**************************9........599************ PP

                     GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                              +v++v++++d++++s++ r++ +++y +  fd+le+ lp++s +ri +E+  +g +i+n++  eg++r+er e+ +k ++r+++ G
  Itr_sc000364.1_g00007.1 295 IVTIVDEDCDLGASSLVSRITTCFNYLWIPFDALETFLPKDSPQRIEYEAD-IGHKIENIIGFEGDQRIERLESGMKLSQRMKNNG 379
                              ***************************************************.********************************** PP

                     GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              F ++p+ e++  ++k+ll +++  g+ ++ e++ lvl+Wk+++ v ++ W
  Itr_sc000364.1_g00007.1 380 FLSAPFCEDTIREVKSLLDEHA-SGWGMKVEDEMLVLTWKGHSAVYATTW 428
                              **********************.66777777899**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.3722410IPR005202Transcription factor GRAS
PfamPF035146.0E-8849428IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MKADLRGNPT SFLFQNPNLF VTSSQPSSDL TGALRGCSSL GSLDGACTEK LLLHCASALE  60
ANDVTLAQQV MWVLNNVASP TGDPNQRLTS WFLRALVSRA SRVCPNAPVT GFGAGNGVHT  120
RLMTVTELAG YVDVIPWHRF GFCAANSEIL RAVQGQNRVH ILDFSITHCM QWPTLIDALA  180
KRPGGPPFLR ISVMSGRPSV PPLLNASCEQ LGVRLSNFAK FRDVPFEFNV IGSESDYIHQ  240
EFPDFHHDFI LSCLTPSCLN LREDEVLAVN CQNWLRYLPS RDTFIDAIKG LNPSIVTIVD  300
EDCDLGASSL VSRITTCFNY LWIPFDALET FLPKDSPQRI EYEADIGHKI ENIIGFEGDQ  360
RIERLESGMK LSQRMKNNGF LSAPFCEDTI REVKSLLDEH ASGWGMKVED EMLVLTWKGH  420
SAVYATTWVV SPQTQVDIEI KD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-574242881472Protein SHORT-ROOT
5b3h_B8e-584242827418Protein SHORT-ROOT
5b3h_E8e-584242827418Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158776.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1J6IIK30.0A0A1J6IIK3_NICAT; Scarecrow-like protein 32
STRINGXP_009631267.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-121GRAS family protein