PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000361.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 570aa    MW: 64265.5 Da    PI: 8.4426
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000361.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.44.9e-384505491100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk lrr+C++dC++ pyfp  +p++f +vh++FGasnv k+l++++e+er d+++sl+yeA++r++dPvyG+vg+i+ l++q
  Itr_sc000361.1_g00018.1 450 RCAACKQLRRRCPSDCIFLPYFPPMDPQRFSFVHRIFGASNVAKMLQKVEEHERGDVAESLYYEAHCRIQDPVYGCVGIITILHEQ 535
                              6************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +   + +la++++e
  Itr_sc000361.1_g00018.1 536 IYGFQCQLAKVEAE 549
                              *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139661.0E-16181264IPR026960Reverse transcriptase zinc-binding domain
PROSITE profilePS5089124.519449550IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-38450547IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MAGRRILTQS SLASIPTYTM QAMSIPVSVC NDIDRVCRNF LWGHGDNSRR IHTINWSDIC  60
RPRDMGGLGL RKARDFNLAF LTKMAWQIST NHNKLWSINF WNDWWTGAGP LAYTNISAPS  120
AADNPTKVSD FITAQRNWDI TALNNILPND KVQEIRAVPI SIAHNKVDSL TWPHSNTGLV  180
SVSSAFSFIA GYKDMDPSHA WIWKMPCVEK IKLFFWKITL NGLMTNTERK RRNLTDAADC  240
QRCGVEEESL DHIFRRCEIA TDCWVASSPS TDFASSFHLP LSTWMEKACI NNQTCGLGLS  300
WRIIFPYILW NIWKNRNHLV FKNTLLPATM IVKKATSEAV EAQRLLLKRT GPLTARQLWV  360
SWSPPQPGFV KINTDGALKA SSGLASAGGS FETTQGADSE ALVQALDNGP RGDPSGSTLI  420
LDCYSLMNQF QEIKTTHVLR EVMSSSSNSR CAACKQLRRR CPSDCIFLPY FPPMDPQRFS  480
FVHRIFGASN VAKMLQKVEE HERGDVAESL YYEAHCRIQD PVYGCVGIIT ILHEQIYGFQ  540
CQLAKVEAEI QAVKAQQLGH FQPQFPPNFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3445156612127LOB family transfactor Ramosa2.1
5ly0_B1e-3445156612127LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163505.11e-154PREDICTED: uncharacterized protein LOC109159849
TrEMBLA0A0F6NGC71e-180A0A0F6NGC7_IPOBA; LINE-type retrotransposon LIb DNA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.19e-44LOB domain-containing protein 24