PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000359.1_g00048.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 523aa MW: 59097.4 Da PI: 5.0333

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000359.1_g00048.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	104.3	1e-32	147	237	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 ++rlws+eD++++LqG++d++a++g ++ d++++++f+k++++++vsk q++eK+rrLKkKf + ++k g+e +f+k+hd+ + Itr_sc000359.1_g00048.1 147 SNRLWSDEDQLAILQGMVDYQAQKG--AYPDMSELHDFIKDKLHIEVSKIQMSEKLRRLKKKFFTLSEK---GDELDFTKPHDSMS 227 68*********************..789***********************************...********** PP DUF573 89 felskkiWgs 98 felsk+iWg+ Itr_sc000359.1_g00048.1 228 FELSKQIWGT 237 ******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.2E-28	148	236	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MAPKYKIRLV DQPPSASSTD EDEEQSEREE LSDLEVNKSE AEYESEFEEE EEERAPSTPI 60 LNQDHSVSEC DESHATLPSP SASDFTIKPI LSSKLPPVSP PKPPAPSKSS AKRAAEAIEK 120 DSKKKRSKTG EGDGNAEEKK SAVSAGSNRL WSDEDQLAIL QGMVDYQAQK GAYPDMSELH 180 DFIKDKLHIE VSKIQMSEKL RRLKKKFFTL SEKGDELDFT KPHDSMSFEL SKQIWGTASG 240 SVNGKNLNAI SNNVELNVKT ANGKVKKPAE VRKISEKPVE AKKISEKPVE AKKISEKPVE 300 VKKISEKPVE VKKISESRNS VKVDNYMNIP NEEESEKKRK KTATKAEEIE KKKKKKQRIA 360 LVEKDKQIAS EEKEERVEQN ALEEKDDPTV VEETDKQIAL DESDKHIAID ERDKQIAPED 420 KNKQVIKDIV NGEVETEEGD FNSKYPQLAN SFIEKNYSWG SPETFNMLKK KLNLIGSSKA 480 EEIEEKWTKL LEEQAELCVK MEDLLSQQMG LVLEAIRQKR SNL

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MAPKYKIRLV DQPPSASSTD EDEEQSEREE LSDLEVNKSE AEYESEFEEE EEERAPSTPI  60
LNQDHSVSEC DESHATLPSP SASDFTIKPI LSSKLPPVSP PKPPAPSKSS AKRAAEAIEK  120
DSKKKRSKTG EGDGNAEEKK SAVSAGSNRL WSDEDQLAIL QGMVDYQAQK GAYPDMSELH  180
DFIKDKLHIE VSKIQMSEKL RRLKKKFFTL SEKGDELDFT KPHDSMSFEL SKQIWGTASG  240
SVNGKNLNAI SNNVELNVKT ANGKVKKPAE VRKISEKPVE AKKISEKPVE AKKISEKPVE  300
VKKISEKPVE VKKISESRNS VKVDNYMNIP NEEESEKKRK KTATKAEEIE KKKKKKQRIA  360
LVEKDKQIAS EEKEERVEQN ALEEKDDPTV VEETDKQIAL DESDKHIAID ERDKQIAPED  420
KNKQVIKDIV NGEVETEEGD FNSKYPQLAN SFIEKNYSWG SPETFNMLKK KLNLIGSSKA  480
EEIEEKWTKL LEEQAELCVK MEDLLSQQMG LVLEAIRQKR SNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	336	340	KKRKK
2	337	355	KRKKTATKAEEIEKKKKKK
3	338	355	RKKTATKAEEIEKKKKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192906.1	0.0	PREDICTED: STOREKEEPER protein-like isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	3e-16	DNA-binding storekeeper protein-related transcriptional regulator