PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000359.1_g00025.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 348aa    MW: 39001.7 Da    PI: 6.3407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000359.1_g00025.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l+++++ +G+g+W+t ++  g+ R++k+c++rw +yl
  Itr_sc000359.1_g00025.1 15 KGPWTPEEDQKLIHYIQAHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 62
                             79********************************************97 PP
2Myb_DNA-binding53.65.2e-1768112147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Itr_sc000359.1_g00025.1  68 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
                              89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-26765IPR009057Homeodomain-like
PROSITE profilePS5129425.4731066IPR017930Myb domain
SuperFamilySSF466891.68E-3112109IPR009057Homeodomain-like
SMARTSM007179.6E-151464IPR001005SANT/Myb domain
PfamPF002495.6E-171562IPR001005SANT/Myb domain
CDDcd001671.36E-121762No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2666117IPR009057Homeodomain-like
PROSITE profilePS5129420.34267117IPR017930Myb domain
SMARTSM007174.8E-1667115IPR001005SANT/Myb domain
PfamPF002492.1E-1568112IPR001005SANT/Myb domain
CDDcd001674.75E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRSPCCVDK TGLKKGPWTP EEDQKLIHYI QAHGPGNWRT LPKNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEETII QLHSVLGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLRM  120
GIDPVTHTPR LDLLDLSSIL GTSTHLNFPS LLGLQAILNP ELLRLATNLF ASQNDNNINP  180
DVLSNPHLQN QNPQMLLRKL QESQLLINPP NFQANSDDHH QFQHPLPPCT TSNNNVSPAC  240
SDLPMQPYST MNTSNLQNNG QVFQESLLQS LENYGGCFGS NQSLSNSSNQ SGLENFSFDS  300
SVLSTPLDSS STLINSGGAN TEDEKESFCS NLMRFDIPDS CLDFEDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-32131172105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-32131172105C-Myb DNA-Binding Domain
1msf_C6e-32131172105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193324.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9LDR81e-103MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1J6ISL41e-125A0A1J6ISL4_NICAT; Transcription factor myb32
STRINGXP_009774387.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.18e-99MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]