PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000358.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 281aa MW: 32126.9 Da PI: 6.797

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000358.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.9	5.2e-33	8	106	32	128
NAM 32 evikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk 115 + i+ev++yk+ P++L + k +ek+ yfF++rd+ky++g+r++ra+ +gyWkat dk+++++ +g ++g kktLv+y+gr pk Itr_sc000358.1_g00016.1 8 NQIQEVNLYKYSPEELSgRYPKLGEKDFYFFTHRDRKYKNGNRPSRAAGDGYWKATTADKPITHRvDGPVIGHKKTLVYYEGRPPK 93 569***********9556666999**********************************989999************ PP NAM 116 gektdWvmheyrl 128 gekt+W+mhe+++ Itr_sc000358.1_g00016.1 94 GEKTNWIMHEFTV 106 *********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.402	1	136	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-39	6	136	IPR003441	NAC domain
Pfam	PF02365	8.3E-13	28	105	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MNYVLPHNQI QEVNLYKYSP EELSGRYPKL GEKDFYFFTH RDRKYKNGNR PSRAAGDGYW 60 KATTADKPIT HRVDGPVIGH KKTLVYYEGR PPKGEKTNWI MHEFTVEEGT ITPKPRGDNV 120 DPMRLDDWVL CRIHKKAAGK VGKSTQKEDE NINIVEANTS PPQDEQSEEV QGVQFSLPLN 180 EMFTFHDPFV FGNGPAYNDP QFINSDLFIP ENIYNQTFDF DIDHFLSSQN VEPPTLLSFQ 240 KAESPTPLSP QKVKTPNPNA SQNTCKDVKH GNCKRKEPPS L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-36	5	136	42	168	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157731.1	2e-93	PREDICTED: NAC transcription factor 32-like
Swissprot	A0SPJ6	5e-39	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A314KX34	4e-53	A0A314KX34_NICAT; Nac transcription factor nam-b1
STRING	XP_009603097.1	7e-54	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	3e-40	NAC domain containing protein 32

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]