PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000358.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 1079aa MW: 120355 Da PI: 4.9382 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 27.8 | 4.9e-09 | 682 | 721 | 4 | 43 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkR 43 ++ +++++ F ++++dAAk L+v++++ Kr C +GI R Itr_sc000358.1_g00008.1 682 GVTRKVVEQLFGKSLHDAAKALKVSPSTFKRPCLDFGITR 721 578999********************************99 PP | |||||||
2 | RWP-RK | 49.2 | 1e-15 | 809 | 852 | 5 | 48 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+ + l++ F + dAAk+L+v++++LKr+CR +GI+RWP k Itr_sc000358.1_g00008.1 809 ITRQALEQLFGNSRDDAAKTLKVSTSTLKRACRDFGINRWPNHK 852 8999*************************************877 PP | |||||||
3 | RWP-RK | 39.1 | 1.5e-12 | 897 | 940 | 5 | 48 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +s++ +++ ++ +AAk+L v++++ Kr+CR +GI+RWP k Itr_sc000358.1_g00008.1 897 MSVKFVQQLICKSSDAAAKTLTVSTSTFKRACRDFGINRWPNHK 940 66778899999999***************************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02042 | 1.1E-7 | 683 | 721 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51519 | 12.423 | 787 | 881 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-14 | 809 | 852 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51519 | 10.216 | 880 | 965 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.2E-10 | 900 | 940 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.73E-15 | 988 | 1074 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 4.9E-16 | 992 | 1076 | No hit | No description |
SMART | SM00666 | 2.0E-13 | 995 | 1077 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 17.17 | 995 | 1077 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.0E-13 | 996 | 1075 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1079 aa Download sequence Send to blast |
MALVENDDAS SLIDPSAENL PSSGLAEQAQ PPPYVVCPSP TRWLFNHGGL TWNPVTEMGT 60 AENASAAALT ESEMSEEGET SVVHHLERDS DNHSECDLLL DMAGGMMMSL SPPRPRMNFS 120 GEEAALFLSP NFHAHMGMGG GMMMSMSPPR MNYFSLPSGD SIDPYRLWNF ADHSEVQELE 180 NMKGMMMRPT WKQQQQQLCA LGQNQSLGIW AAENMGLGGT VQTSDDDSVN NVDEWFQLAG 240 GMNYTLPSDD SHSLGGSFDP YRLRDDGEFS VVHDVNPVVE LAHLYVVVGI ELFFPEKVSQ 300 DMAIKLFECL EMGTILPVEY ISVVSWENKY IVVDLKAESW GGIMEQISVD YPQISDQIDE 360 QVYYIRQLPP LIICCLEEVE FEIEVEEFKC NFCIPKTLRS NSSLDSLILL GSCKPDLPGV 420 TPCLLSLECL CQNMVIELGN GEQIIIMRLN VKQAAAYLEV DFSSEKNYAV CSSQALELES 480 RGGMIMERIS VSHRWQFAFC SKTHRWNVVL ELLDVVVRQL LYLGTNNYSF GISVNDDRSS 540 SSSSVNTKMH SLLYFERTFL EMQHLNSLER HFLDHFERLV QTGVLELLSG EEIKLRYLQE 600 EEEEVGTASK KNHSVSILPA LLEAECRRGG NGMMQLDSPC EGHIPKSSVT DEERNVVGLK 660 RIDAIGNISK KKDIIWWQKD HGVTRKVVEQ LFGKSLHDAA KALKVSPSTF KRPCLDFGIT 720 RRSLEEVGTA SEENHTAHIW PALEAHYNAA GTGGMLLQHE DSSSEPHIPE SSATNNVVEL 780 NNSIDNAKGG NSSSEKTNTV SRWEKDYGIT RQALEQLFGN SRDDAAKTLK VSTSTLKRAC 840 RDFGINRWPN HKGKRPNCSL NQKQDIQAVK KHKGIPPCPA LPPLEGTNTS QCNSTIMSVK 900 FVQQLICKSS DAAAKTLTVS TSTFKRACRD FGINRWPNHK GKMPNFSLNQ KQDVQAVKRH 960 KGIQPCPALP PEEATTTLHL PPEEATTTTL QGNSAMSVKA TYEDNTIRFP LPSSSTIKYL 1020 EEQLETRFKI SLENFSILYQ DEEADWISLT CDSDLMYGMD VLRSSGKTVV KMKINPNFG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157794.1 | 0.0 | PREDICTED: uncharacterized protein LOC109154494 isoform X2 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10406 | 5 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64530.1 | 9e-23 | Nin-like family protein |