PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000358.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 684aa MW: 76972.8 Da PI: 5.0941

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000358.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	47.9	2.7e-15	512	556	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+ ++l++ F ++ dAAk+L+v++++ Kr+CR +GI+RWP k Itr_sc000358.1_g00007.1 512 GITRQVLEQLFGKNRDDAAKTLKVSTSTFKRACRDFGINRWPNHK 556 6999**************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.661	491	588	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-14	513	556	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.86E-15	593	680	No hit	No description
SMART	SM00666	4.6E-12	600	682	IPR000270	PB1 domain
PROSITE profile	PS51745	17.306	600	682	IPR000270	PB1 domain
Pfam	PF00564	5.4E-13	601	678	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.5E-15	602	681	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MTLIENDDDD ASSFFDLFAE NLASPGLAPT YAASPSPTPT RWLFNHGGLT WNPVTEMRTA 60 ENAAAAALRE WEMSEEGESS VVNHPQRDGE EALFFTPNFL ADIGGGMIMS TSPLRMNCFS 120 PPSGDSIGNF DPYRLWNFAD HSGAQELENR KGMTMRPTWK QQQPCNEEDD YPQFLVIAEL 180 TIVALDCTVQ IKESGLQFVK PCLLSLECLC QNMVIELVNG EQIMRLNVNL KHAYLEVDFS 240 SEKSNAICSS QALELESWGG MIMEWISVNH QRRYAFCSKM RPWRVILELL DVVVRQLLYL 300 GENNYSFGIS VSSSSSSSSV NTKLQSVLYF ERTFLEMQHL NSLERQFLDH FERLVQTGVL 360 ELLSGEEIKL QYLQEGEVGS ASEENHSVSI LPPLLEAECR MMQLLGKRRR DILKVSSSTF 420 KRARRDFGIT RRSLEEVDSA SEENHTAQCN AAGTGGMLLQ QEDSSSEPHI PVPSATNEER 480 NNVVELKSID AKGGNSSSDK TDTISRWEKD HGITRQVLEQ LFGKNRDDAA KTLKVSTSTF 540 KRACRDFGIN RWPNHKGKRP NNGSLNQKHV QAVKKHKGIQ RCPALPPEEA TTTTLQGNSA 600 MSVKVTYEDN TIRFPLPSSS TMKYLEEQLE TRLKICLENF SIMYQDEEAD WISLTCDSDL 660 KCGMNVLRSS DKTVVKMKIK PNFG

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MTLIENDDDD ASSFFDLFAE NLASPGLAPT YAASPSPTPT RWLFNHGGLT WNPVTEMRTA  60
ENAAAAALRE WEMSEEGESS VVNHPQRDGE EALFFTPNFL ADIGGGMIMS TSPLRMNCFS  120
PPSGDSIGNF DPYRLWNFAD HSGAQELENR KGMTMRPTWK QQQPCNEEDD YPQFLVIAEL  180
TIVALDCTVQ IKESGLQFVK PCLLSLECLC QNMVIELVNG EQIMRLNVNL KHAYLEVDFS  240
SEKSNAICSS QALELESWGG MIMEWISVNH QRRYAFCSKM RPWRVILELL DVVVRQLLYL  300
GENNYSFGIS VSSSSSSSSV NTKLQSVLYF ERTFLEMQHL NSLERQFLDH FERLVQTGVL  360
ELLSGEEIKL QYLQEGEVGS ASEENHSVSI LPPLLEAECR MMQLLGKRRR DILKVSSSTF  420
KRARRDFGIT RRSLEEVDSA SEENHTAQCN AAGTGGMLLQ QEDSSSEPHI PVPSATNEER  480
NNVVELKSID AKGGNSSSDK TDTISRWEKD HGITRQVLEQ LFGKNRDDAA KTLKVSTSTF  540
KRACRDFGIN RWPNHKGKRP NNGSLNQKHV QAVKKHKGIQ RCPALPPEEA TTTTLQGNSA  600
MSVKVTYEDN TIRFPLPSSS TMKYLEEQLE TRLKICLENF SIMYQDEEAD WISLTCDSDL  660
KCGMNVLRSS DKTVVKMKIK PNFG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157794.1	0.0	PREDICTED: uncharacterized protein LOC109154494 isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13981	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-10	NIN like protein 7