PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000355.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18716.4 Da PI: 7.8092 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.5 | 2.7e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q Itr_sc000355.1_g00003.1 6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQEVPVKQRGDAVSSLVYEADARVRDPVYGCVGAISYLQNQ 91 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 ++ql+ +la++++e Itr_sc000355.1_g00003.1 92 VSQLQMQLAVAQAE 105 **********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.663 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGGNSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK IFGASNVSKM LQEVPVKQRG 60 DAVSSLVYEA DARVRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MNHQDPAPTF 120 PVDHQKSLLF SPETAAATAN FGTNLQQYLN FAPSSTAVMQ DPLKRESLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-48 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-48 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019178528.1 | 1e-112 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 2e-75 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A068ULU3 | 4e-90 | A0A068ULU3_COFCA; Uncharacterized protein | ||||
STRING | VIT_06s0004g07200.t01 | 4e-88 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 9e-78 | LBD family protein |
Publications ? help Back to Top | |||
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