PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000354.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 243aa    MW: 27606.9 Da    PI: 7.9386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000354.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-054971123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + F++   L  H+++H
  Itr_sc000354.1_g00016.1 49 YTCNFCRREFRSAQALGGHMNVH 71
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-64675No hitNo description
PROSITE profilePS5015711.1984976IPR007087Zinc finger, C2H2
SMARTSM003550.00734971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEQTRYLVWP KPKLDFSSSY GGDSWEEQAF AEDAAGGALG GCVWPPRSYT CNFCRREFRS  60
AQALGGHMNV HRRDRAKLKH SSPSHNGDLS VPINNNPRPL LTQYPSQACT FLYNPSSDRR  120
IVAPNLGSES WDDDGVNGET KKEKNCSRIL EDLKKNINCE EDDERLRMFK SSRCRAEGEY  180
DMMADLSAGS FRKRRRIDDS LFAGCDPKPK PCLVQRFERT VHSSIEQELD LELRLGTSPP  240
KVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-134471229superman protein
2l1o_A7e-134471229Transcriptional regulator SUPERMAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195RKRRR
2192196KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162938.11e-133PREDICTED: probable transcriptional regulator RABBIT EARS
RefseqXP_019162939.11e-133PREDICTED: probable transcriptional regulator RABBIT EARS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.17e-30C2H2 family protein