PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000352.1_g00056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 308aa MW: 32451.1 Da PI: 4.4068 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g Itr_sc000352.1_g00056.1 33 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRG 83 6899******.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.7E-13 | 33 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.16E-29 | 33 | 91 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-19 | 34 | 92 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-33 | 34 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.074 | 34 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-28 | 34 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MDMMTNKSKS SSSGKSKKSA SGGSGQQAEP SGCRYLGVRR RPWGRYAAEI RDPNTKERHW 60 LGTFDTAEEA ALAYDRAARS MRGKSRARTN FVYSDMPPGS SVTSIISPDE PQYAVYNNDF 120 PHFPGGLFSA PAQNVEQHYQ SGNGNHAGAD QFLLFGADQS GGGADLLDIG GINGGCEFFQ 180 DYYCNGNGNG VDESNNAAAM AMAAELPPLP PDITTSCSGG YFGSGFGGEA TSSGDNAAYT 240 TVMDGGVSAS AGWDYYGYGG GGGSTEMAMQ PQAPPEMNYG SSESDGINMF TTNSYSFSTS 300 NNYGGYWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-18 | 35 | 91 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-17 | 21 | 91 | 3 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180233.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A484KJC0 | 2e-91 | A0A484KJC0_9ASTE; Uncharacterized protein | ||||
STRING | POPTR_0003s15940.1 | 2e-50 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 4e-33 | ERF family protein |