PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000352.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 257aa MW: 28970.2 Da PI: 6.1823 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.9 | 2.4e-24 | 181 | 239 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 Dg+ WrKYG+K+v++s++++sYY+C ++ +Cp+kk+v+ s+ d++ +itY+g+Hnh+ Itr_sc000352.1_g00009.1 181 DGWVWRKYGKKMVNDSPHSKSYYKCNHEgeKCPAKKHVQLSHMDESKYIITYRGNHNHP 239 9**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-24 | 174 | 241 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-22 | 177 | 241 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-24 | 179 | 240 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-21 | 181 | 239 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.697 | 181 | 241 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDGENDWDLA AVVRGCSNLN GNSSSQDVHE HFNGDFPSQT YDSIPLLPQQ SRDHGSAFPS 60 IVTERYYFGL EEVIDRFTSR KTREPIVDPQ GTIIPPTSLD KVDGSGSGGI EKDTRVPQSP 120 NPSPTLEPQQ PLPSPQTDSL EKGGGLEDEK LQVNEVEMLV EKVQVVVEKV EVPVEKVDEW 180 DGWVWRKYGK KMVNDSPHSK SYYKCNHEGE KCPAKKHVQL SHMDESKYII TYRGNHNHPP 240 PVQNTTTKHR KRSRARA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-12 | 181 | 241 | 16 | 74 | WRKY transcription factor 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195569.1 | 2e-76 | PREDICTED: probable WRKY transcription factor 69 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11091 | 13 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.1 | 3e-17 | WRKY DNA-binding protein 69 |