PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000349.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 536aa    MW: 60178 Da    PI: 5.1717
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000349.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.15.2e-1331675362374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              +e L++cA+a+ ++d  +a++ +++l++++s  g+p+qRl ay++e++ arla+s+s++ykal+++e +   s e ++++ l++ev
  Itr_sc000349.1_g00015.1 167 KESLVACAKAIGDNDIPRAEWWMSELRTMVSVCGEPIQRLGAYMLEGMVARLASSGSSIYKALRCKEPT---SNELFSYMYLLYEV 249
                              789*****************************************************************9...8999999999**** PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P++kf++l aN aI++a++ e+rvHiiDf+isqG+QW++L++aLa+Rp+gpp++ iTg+++++s   +   le +g+rL+ +Ae+
  Itr_sc000349.1_g00015.1 250 CPFFKFGYLSANGAIVDAMKDEDRVHIIDFQISQGTQWITLIHALAARPGGPPQICITGIDDSTSAhaRGGGLEIVGKRLSTLAES 335
                              **************************************************************9888889999************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              ++vpfef++ va +++d+++e+L+v+pgEalaVn+ l lh+++de+v ++++r++++++v+sl Pkvv++veqe+d+n+ +F+ rf
  Itr_sc000349.1_g00015.1 336 CKVPFEFRA-VAASCADVKIEHLNVRPGEALAVNFPLVLHHMPDEDVGTQNHRERLVRMVRSLFPKVVTLVEQESDTNKVPFFPRF 420
                              *********.7999************************************************************************ PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              le+l+yy a+f+s+++ lpr+++eri+vE+++l+re+vn++aceg er+erhe lekWr+r+++aGFkp+pls+++++++k+ll++
  Itr_sc000349.1_g00015.1 421 LETLNYYLAVFESIDVALPRDHKERINVEQHCLAREVVNILACEGVERVERHEVLEKWRSRFSMAGFKPYPLSSSVNATIKTLLEN 506
                              ************************************************************************************** PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + +d y++ee++++l+lgW++r+L++ +aW+
  Itr_sc000349.1_g00015.1 507 YCKD-YTLEERDQALYLGWMNRALIASCAWQ 536
                              **77.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.236140517IPR005202Transcription factor GRAS
PfamPF035141.8E-130167536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MQPSQNNMNM DGSRRFYNQP MQDLESYCLP TDNQLLAVGD NHSAEFFAQT NSQYHDVMSY  60
GYPGHGYTAD SFLSDTSGIL QQDSQLYLAD VHHHSPEETY HSAASKSSLS DENDLKHKLR  120
ELESAMFGHG SDALEAYGSN MGTPDQMSSE AEKLEEMMGI TSRGSLKESL VACAKAIGDN  180
DIPRAEWWMS ELRTMVSVCG EPIQRLGAYM LEGMVARLAS SGSSIYKALR CKEPTSNELF  240
SYMYLLYEVC PFFKFGYLSA NGAIVDAMKD EDRVHIIDFQ ISQGTQWITL IHALAARPGG  300
PPQICITGID DSTSAHARGG GLEIVGKRLS TLAESCKVPF EFRAVAASCA DVKIEHLNVR  360
PGEALAVNFP LVLHHMPDED VGTQNHRERL VRMVRSLFPK VVTLVEQESD TNKVPFFPRF  420
LETLNYYLAV FESIDVALPR DHKERINVEQ HCLAREVVNI LACEGVERVE RHEVLEKWRS  480
RFSMAGFKPY PLSSSVNATI KTLLENYCKD YTLEERDQAL YLGWMNRALI ASCAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6317353526378Protein SCARECROW
5b3h_A2e-6317353525377Protein SCARECROW
5b3h_D2e-6317353525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194098.10.0PREDICTED: scarecrow-like protein 21 isoform X1
RefseqXP_019194099.10.0PREDICTED: scarecrow-like protein 21 isoform X1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1S4AFF80.0A0A1S4AFF8_TOBAC; scarecrow-like transcription factor PAT1
STRINGXP_009804325.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]