PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000347.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 282aa    MW: 30967.5 Da    PI: 8.1302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000347.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19126174355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++GVr+++ +g+W+AeIrdp     +  +r++lg+f taeeAa+a+++ + +++g
  Itr_sc000347.1_g00013.1 126 FRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFNTAEEAARAYDKKAIEFRG 174
                              8*******.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.5E-32125182IPR001471AP2/ERF domain
SMARTSM003805.9E-37125188IPR001471AP2/ERF domain
PROSITE profilePS5103224.144125182IPR001471AP2/ERF domain
CDDcd000181.52E-31126182No hitNo description
SuperFamilySSF541712.88E-22126183IPR016177DNA-binding domain
PfamPF008475.3E-13126174IPR001471AP2/ERF domain
PRINTSPR003671.3E-11126137IPR001471AP2/ERF domain
PRINTSPR003671.3E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNRIGRRLKQ ERSSGDQGHR TPARLTGDQE FSVMVSALKN VISGNAVTAE ENVDLFSSFE  60
FLAAATAGDS STSAAAELPP FLSVPEGNTC QFCGISGCLG CNFFGPTEAG EDKKNNKNVA  120
KKKKNFRGVR QRPWGKWAAE IRDPHKAARV WLGTFNTAEE AARAYDKKAI EFRGPRAKLN  180
FPFADYTSSN PHQLLQRSAS TPSSHLRRPM PPPPPPQQQQ EISAKMSNLA AKMEVGTSSN  240
ENELWKFGED EVQNCWTMMM DFNGDSSDSA GGYVQPSDHQ SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22122183264ATERF1
3gcc_A1e-22122183264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169018.11e-163PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ063e-37EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A484KZ847e-75A0A484KZ84_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-35redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]