PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000346.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 1073aa MW: 119585 Da PI: 7.4347

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000346.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125	3e-39	142	219	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+++l++ak+yhrrhkvCe+hsk +++lv++++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ Itr_sc000346.1_g00009.1 142 MCQVDNCRENLTNAKDYHRRHKVCEIHSKVSKALVRDQMQRFCQQCSRFHLLLEFDEGKRSCRRRLAGHNKRRRKTQP 219 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.9E-32	137	204	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.257	140	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-36	141	221	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-27	143	216	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	9.1E-4	859	958	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.42E-5	862	961	No hit	No description
SuperFamily	SSF48403	5.91E-6	864	960	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1073 aa Download sequence Send to blast
MLIHHQQLGG YLPHSMAKKR SLPFQPINMS QQRNPLDTWN PKAWEWDSTR FLAKRKDYDG 60 FQPGAGAELQ LRRDGAVPVQ PKRREEQMDD PKKTIHVVED DETLRLNLGG TGGCKLNAAE 120 ELALQPNKRV RSGSPNGGNY PMCQVDNCRE NLTNAKDYHR RHKVCEIHSK VSKALVRDQM 180 QRFCQQCSRF HLLLEFDEGK RSCRRRLAGH NKRRRKTQPD DTTSRPLLPG NNDNSGNRNL 240 DIVNLLAVLA SEKGNNDPRS ANIPLVPDKD QIMEILSKIK SLPLPANLVD KLPASGSSSQ 300 TSANQLPPGF KANESISSPS TLDLLSPLSA TPAAGSSDAV DIQSQRSSQG SDTERSTLTC 360 VEKVKWLNLQ ERPPLELLSV QGDRTSASYQ STDDLDFQVH ETRSHLPLQL FSSQTEDDSP 420 PRLAGCGKYF SSESSNPSAE RSPSSSPHVE HKLFPTQISS ETVKPNCTFA SREETQENKN 480 LNATKKSGCI TSLKLFGGSI TGTDICSIQN PAYRTGYTSS YGSDHSPSST NSDARDRTGR 540 IIFKLFDKDP SHLPGTLRTQ IYNWLSKSPS DMESYIRPGC IVLSLYLSMP PSVWEQLEED 600 LFQYANALVK EVDPQFWASG RFLIRTDKQL ALHKDGNIRV CKLWREWKSP ELIYVSPLAI 660 ISGQEIYLTL KGRNLNFPGT KINCTHAGGY TIRSVPSSAC QENACEEIIL GNFVIDDKDP 720 SLLGRCFIEV ENGFGGSTFP VIIADNAVCE ELRCLESEII EIVKVPKAVL EHGNQDFWMP 780 RSREEVVHFL NELGWLFQRK GNSSMFEGPD FMISRFKFLF MFSVEHDFCA VVKTLLDILL 840 EITLVREASR ESLEMLFELQ LLSRAVKRKC RKMVDLLVHY SICASGGSSI KYIFTPNLTG 900 PGGITPLHLA ACTSNSDDIV DALTSDPQEI GLHCWESVLD ENGLSPCAYA SMRNNHSYNK 960 LVSQKLSVRE NCKEICLVIG NEVEEQEHKP PPPAAAAASQ VNKEPKSCSK CASAAIMRYN 1020 RPRGPRGLMY RPYIHSLLAI AAVCACVCIF FRGSPDIGSV APLKWENLDF GAI

Sequence ? help Back to Top

Protein Sequence Length: 1073 aa Download sequence Send to blast

MLIHHQQLGG YLPHSMAKKR SLPFQPINMS QQRNPLDTWN PKAWEWDSTR FLAKRKDYDG  60
FQPGAGAELQ LRRDGAVPVQ PKRREEQMDD PKKTIHVVED DETLRLNLGG TGGCKLNAAE  120
ELALQPNKRV RSGSPNGGNY PMCQVDNCRE NLTNAKDYHR RHKVCEIHSK VSKALVRDQM  180
QRFCQQCSRF HLLLEFDEGK RSCRRRLAGH NKRRRKTQPD DTTSRPLLPG NNDNSGNRNL  240
DIVNLLAVLA SEKGNNDPRS ANIPLVPDKD QIMEILSKIK SLPLPANLVD KLPASGSSSQ  300
TSANQLPPGF KANESISSPS TLDLLSPLSA TPAAGSSDAV DIQSQRSSQG SDTERSTLTC  360
VEKVKWLNLQ ERPPLELLSV QGDRTSASYQ STDDLDFQVH ETRSHLPLQL FSSQTEDDSP  420
PRLAGCGKYF SSESSNPSAE RSPSSSPHVE HKLFPTQISS ETVKPNCTFA SREETQENKN  480
LNATKKSGCI TSLKLFGGSI TGTDICSIQN PAYRTGYTSS YGSDHSPSST NSDARDRTGR  540
IIFKLFDKDP SHLPGTLRTQ IYNWLSKSPS DMESYIRPGC IVLSLYLSMP PSVWEQLEED  600
LFQYANALVK EVDPQFWASG RFLIRTDKQL ALHKDGNIRV CKLWREWKSP ELIYVSPLAI  660
ISGQEIYLTL KGRNLNFPGT KINCTHAGGY TIRSVPSSAC QENACEEIIL GNFVIDDKDP  720
SLLGRCFIEV ENGFGGSTFP VIIADNAVCE ELRCLESEII EIVKVPKAVL EHGNQDFWMP  780
RSREEVVHFL NELGWLFQRK GNSSMFEGPD FMISRFKFLF MFSVEHDFCA VVKTLLDILL  840
EITLVREASR ESLEMLFELQ LLSRAVKRKC RKMVDLLVHY SICASGGSSI KYIFTPNLTG  900
PGGITPLHLA ACTSNSDDIV DALTSDPQEI GLHCWESVLD ENGLSPCAYA SMRNNHSYNK  960
LVSQKLSVRE NCKEICLVIG NEVEEQEHKP PPPAAAAASQ VNKEPKSCSK CASAAIMRYN  1020
RPRGPRGLMY RPYIHSLLAI AAVCACVCIF FRGSPDIGSV APLKWENLDF GAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-29	133	216	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00664	PBM	Transfer from Potri.002G002400	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171998.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14 isoform X1
TrEMBL	A0A484K8J6	0.0	A0A484K8J6_9ASTE; Uncharacterized protein
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14