PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000346.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 395aa    MW: 43669.6 Da    PI: 6.3246
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000346.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.55.2e-07221263446
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                               k+ +r  +NR AA rsR+RKk ++  Le k+k  e+e ++L 
  Itr_sc000346.1_g00004.1 221 AKKRKRQLRNRDAAVRSRERKKTYVRDLELKSKYYESECRRLG 263
                              6999*****************************9999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.1E-9217280No hitNo description
SMARTSM003382.1E-4218282IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186220262IPR004827Basic-leucine zipper domain
PfamPF077167.9E-5221270IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-9222278No hitNo description
CDDcd147041.10E-13223274No hitNo description
PROSITE patternPS000360225240IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTQSPPLRKC VRFAKHGPEG SRKESASPSP RRKAVFPISI NCSPKNEFSR NPFRYLSILS  60
VLALQSFVSC RCAMVGNGGI PGEQNIDFDW NRLLDDDNFL FAAVDEGFSN LSPDSLPLSI  120
GDIEEILMKD DDAAPYDFIS EILLDSPAEA SAPSGEVAGI EESDHSGEVV GTPDTKGSSG  180
SEVEDDGKGK ERDTVEGVEQ FQQKADNAAE VLADDNDDPI AKKRKRQLRN RDAAVRSRER  240
KKTYVRDLEL KSKYYESECR RLGIMLQYCL AENQTLRLSL QNSKAVGASM PMQESAVLLL  300
ESLLLGSLHW FLGITCLLIL LPLLQSTPLR VVPQEGQENK NQASLAPGKV GSRTNRIWVI  360
QSKMGKRYKA SRSRMKSTSV LAQVPTVWVC GMLAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222241KRKRQLRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172061.10.0PREDICTED: bZIP transcription factor 60
TrEMBLA0A484K3T14e-82A0A484K3T1_9ASTE; Uncharacterized protein
STRINGXP_009608063.19e-62(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71012128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.15e-17basic region/leucine zipper motif 60