PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000341.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 655aa    MW: 73645.3 Da    PI: 6.1851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000341.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12418461755
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+ +Lq
  Itr_sc000341.1_g00006.1 418 VAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMELQ 461
                              68*********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-20102255IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.37411460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-12413463No hitNo description
SuperFamilySSF474596.02E-16414473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-15417466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9418461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15418472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MYGVIGVEGV VGLQDKVSFW IKAAIFLVRY VVILAFFSVF ESTRKKDSLQ RLAVSRSQKI  60
FSSKIRVKLE EQSKVFQGLL YRGFKLFGTV AGNMILVQSI VERLRPIVGS KNWDYCVFWK  120
MSEDQRFLEW LCCCCAGADG VHNCEQELLF PVSSSSSSSS SSCLPCRDVL FQHPRTKSCD  180
LLAQLPASIL LDSGMYAQAF LSSQAKWLNF SQLSESNVSD EIIGTRVLIP QPLGLIELFA  240
AKLVPEDQQV IDFVSSQCSI YLEQQAMMLN SGSSSGIPAD NGDDQLDPRN LFQPVISPSP  300
SAHPIHLTSL PMSFLPQLSY TADIGNCKSG TSMLMQNTSE LSAFRSQMEN GLDEIDVVQK  360
QLMERLENKD DQGGNDDDSY RQENGRSHSI SDSDQNEDED DAKYRRRTGK GPQSKNLVAE  420
RKRRKKLNER LYALRALVPK ISKLDRASIL GDAIEYVMEL QKQAKDLQNE LEVNSDDEGT  480
GGRNRNNNLR AEDRNGINPC VPKPEPEKHS NLESEKTDDK VQQMEPQVEV AQLDGSEFLV  540
KVFCEHKYGG FVRLMEALNS LGLEVTNVNT TRHTCLVSNI FKVEKRDSEM VQADHVRESL  600
LELTRNPGGR GWAEMGGKEA SVESSDHVVV NGMEHHRLHH HLQLHTQHHL HRLHN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404425RRRTGKGPQSKNLVAERKRRKK
2419426ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165987.10.0PREDICTED: transcription factor ABORTED MICROSPORES
RefseqXP_019165988.10.0PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A328DT140.0A0A328DT14_9ASTE; Uncharacterized protein
STRINGXP_009786139.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-136bHLH family protein