PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000327.1_g00037.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 441aa MW: 48522.8 Da PI: 8.6727

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000327.1_g00037.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Itr_sc000327.1_g00037.1 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	12.4	0.00048	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Itr_sc000327.1_g00037.1 134 WKCEKCSKFYAVQSDWKAHSKTC 156 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.97E-6	57	80	No hit	No description
Pfam	PF12171	6.8E-5	58	80	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	58	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.9E-4	122	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.97E-6	129	154	No hit	No description
SMART	SM00355	190	134	154	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MFPDQELSVS ALNPMLLHSA IDEQPQKMKK KRNLPGNPDP DAEVIALSPK TLLATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLKQRS NKENRKRVYV CPEPTCVHHH PSRALGDLTG 120 IKKHFCRKHG EKKWKCEKCS KFYAVQSDWK AHSKTCGTRE YRCDCGTLFS RKDSFITHRA 180 FCDALAEESA RLSANSILLM HPTSTASLTT GAPPITAQMQ PSFHLNPSSL FPNAPPQRHF 240 ANPPSPIMSG GQHISLSSPW DAPPSQNPNH HPLPMIKTEE SMGLPPYFQE PPPLMAASGS 300 SAVLSATALL QKAASIGATV GHVNSSMAQL DRGTVGHVNM KMAPHDYLGF ATWQKGDPLT 360 RDFLGLTADH ESSSARDHDH HRLLSYAAAA GGGGGGVDEL FPSSSTNNSM YNERDNSLFK 420 HHQLSFGFAA AETASETWGN C

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MFPDQELSVS ALNPMLLHSA IDEQPQKMKK KRNLPGNPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLKQRS NKENRKRVYV CPEPTCVHHH PSRALGDLTG  120
IKKHFCRKHG EKKWKCEKCS KFYAVQSDWK AHSKTCGTRE YRCDCGTLFS RKDSFITHRA  180
FCDALAEESA RLSANSILLM HPTSTASLTT GAPPITAQMQ PSFHLNPSSL FPNAPPQRHF  240
ANPPSPIMSG GQHISLSSPW DAPPSQNPNH HPLPMIKTEE SMGLPPYFQE PPPLMAASGS  300
SAVLSATALL QKAASIGATV GHVNSSMAQL DRGTVGHVNM KMAPHDYLGF ATWQKGDPLT  360
RDFLGLTADH ESSSARDHDH HRLLSYAAAA GGGGGGVDEL FPSSSTNNSM YNERDNSLFK  420
HHQLSFGFAA AETASETWGN C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	130	194	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	130	194	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019161401.1	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	O22759	1e-123	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A1S4AMN4	0.0	A0A1S4AMN4_TOBAC; protein indeterminate-domain 2-like
TrEMBL	A0A1U7X5S4	0.0	A0A1U7X5S4_NICSY; zinc finger protein NUTCRACKER-like
STRING	XP_009786203.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-123	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]