PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000325.1_g00028.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 360aa MW: 38437.1 Da PI: 6.586

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000325.1_g00028.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.6	2.3e-07	33	74	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ ++ ++ fC+ + ++C C ++ H+ H++ Itr_sc000325.1_g00028.1 33 KPCDYCKATVASVFCRADAAFMCIACDTAVHNAggtagaHER 74 68****99*******************76888888876 PP
2	zf-B_box	26.6	1.3e-08	75	120	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ Itr_sc000325.1_g00028.1 75 VWVCEVCEQVPASVTCKADAAALCVTCDHDIHSAnplaqrHERVPV 120 689*****************************66899999999986 PP
3	CCT	69.6	8e-24	291	334	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Itr_sc000325.1_g00028.1 291 REAKVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 334 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.826	30	77	IPR000315	B-box-type zinc finger
SMART	SM00336	2.7E-9	30	77	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.5E-6	33	74	IPR000315	B-box-type zinc finger
CDD	cd00021	6.30E-8	34	77	No hit	No description
PROSITE profile	PS50119	10.608	73	120	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.5E-6	74	120	IPR000315	B-box-type zinc finger
CDD	cd00021	1.52E-8	76	120	No hit	No description
SMART	SM00336	1.7E-7	78	120	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.767	291	333	IPR010402	CCT domain
Pfam	PF06203	1.2E-17	291	333	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGVGMVESGV GVGLKCFSGG WTAAAAAPNT AAKPCDYCKA TVASVFCRAD AAFMCIACDT 60 AVHNAGGTAG AHERVWVCEV CEQVPASVTC KADAAALCVT CDHDIHSANP LAQRHERVPV 120 TPFYDSAAEA ALKSSAFATN ALPPNPCNAN IDIPIPWNPS KPPLLIPEIK SSTVDLSFSD 180 SDHFLDFDYP ISSLETNNLA QHDSVNDSIV PVQPTKPSAA IANRFDIDFT RPNTKSYNAR 240 SLSHSVSSSS LDAGVVPDGS AASEISYSLG QNVAGGVDLS NTATQLVGKE REAKVLRYRE 300 KRKNRRFEKT IRYASRKAYA ETRPRIKGRF AKRTEVESDI DAIFSADFVA DHGYGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGVGMVESGV GVGLKCFSGG WTAAAAAPNT AAKPCDYCKA TVASVFCRAD AAFMCIACDT  60
AVHNAGGTAG AHERVWVCEV CEQVPASVTC KADAAALCVT CDHDIHSANP LAQRHERVPV  120
TPFYDSAAEA ALKSSAFATN ALPPNPCNAN IDIPIPWNPS KPPLLIPEIK SSTVDLSFSD  180
SDHFLDFDYP ISSLETNNLA QHDSVNDSIV PVQPTKPSAA IANRFDIDFT RPNTKSYNAR  240
SLSHSVSSSS LDAGVVPDGS AASEISYSLG QNVAGGVDLS NTATQLVGKE REAKVLRYRE  300
KRKNRRFEKT IRYASRKAYA ETRPRIKGRF AKRTEVESDI DAIFSADFVA DHGYGVVPSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197893.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5
Swissprot	Q9FHH8	1e-96	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A328DYP7	1e-144	A0A328DYP7_9ASTE; Uncharacterized protein
STRING	GLYMA13G01290.1	1e-113	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1035	23	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-83	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]