PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000325.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 610aa    MW: 69545.5 Da    PI: 4.9074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000325.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.11.4e-431572861128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppG+ F+Ptd+el+ eyL k+v++ +l+  + i++v++y+++P+ L +++k   ++kewyfF++r++ky++gkr+nra+ +gyWk
  Itr_sc000325.1_g00018.1 157 LPPGYVFNPTDDELIGEYLDKQVKNLPLPR-NRINSVNLYSFNPEALCQMFKDycGNKEWYFFTPRSRKYRNGKRPNRAAGNGYWK 241
                              79**************************99.77**************75443344899**************************** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atg d+e+l+  ++++vg +k Lvfy g+ p+g+kt W+mheyr+
  Itr_sc000325.1_g00018.1 242 ATGADREILAFgTNAKVGYRKALVFYMGKPPNGQKTPWIMHEYRV 286
                              *********9867788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-50155312IPR003441NAC domain
PROSITE profilePS5100552.293157312IPR003441NAC domain
PfamPF023657.2E-23158286IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MGNCISRGFG VSDNVEKTEE MSNTMMGRGL ELPDDYSTYG VTGRGYRNRC REAFDYYKNN  60
NKVEAAEVFP RYNSGGVWKV NLVISSEQLS QILSEEARTE ALIESVRTAA KCPASGASSV  120
AVAADSHQRS DDVQNPTDND VDHLLRSIND DDYFRLLPPG YVFNPTDDEL IGEYLDKQVK  180
NLPLPRNRIN SVNLYSFNPE ALCQMFKDYC GNKEWYFFTP RSRKYRNGKR PNRAAGNGYW  240
KATGADREIL AFGTNAKVGY RKALVFYMGK PPNGQKTPWI MHEYRVEDGP ECDRSVDAMK  300
LDDWVLCRIY NKMDKSSKNN NNNNNNNSNS SSSSSNNKEE KPKQKEKDDD DEEDEEEDKD  360
AEIDGDDDVP ENTTIARSDD QNHFEASPSY DHQLLPIHII TPPLHASSPY NNPHMWNQPM  420
IPPQTSTSNN NVIQIQMSSF PNQNHQQLIS AGLQWRHQKQ EDHNNVLIHH HHNNPLPQNY  480
FHPENTTFQA LQPSINANLQ LPYQPHNWQE PHPSFNGDHH LYYHHNSSSA PITADNNIPY  540
QQHNSELLEA PQPGINGDTN NNNNPHQQQN YSQAPQPSTN NGNDTTKTQT TDDYEEENDA  600
NYDTNQFLAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4715731815174Stress-induced transcription factor NAC1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197856.11e-118PREDICTED: NAC domain-containing protein 18-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-51NAC domain containing protein 32