PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000322.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 437aa MW: 49482.7 Da PI: 7.1358 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 430.1 | 1.7e-131 | 41 | 434 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lLl+cA++v++g l a+ +L ++s+laspdgd+mqR+a+yf+eALa r++rs+++lykal++++ + ++++a k++++ Itr_sc000322.1_g00012.1 41 LIHLLLTCANHVAAGALDSANVALDQISHLASPDGDTMQRIASYFAEALADRILRSWPGLYKALHSTRLP--VLPDQVTAKKMLYD 124 689*************************************************************999998..599999******** PP GRAS 87 vsPilkf...........shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161 ++P+lk+ +++++NqaI ea+ege+ vHiiD+++ +++QW +Ll+ L++Rpegpp+lRiTgv++ ++e l ++ Itr_sc000322.1_g00012.1 125 LFPFLKVhgaglsnpvqvAFMVTNQAIIEAMEGEKLVHIIDLNAVEPTQWRPLLRDLSARPEGPPHLRITGVHP----HREPLDQM 206 ****9753333333333289******************************************************....9******* PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...............desvsles.erdevLklv 231 ++ L++ Ae+l++pf+f++ ++++le+l++++Lrvk+gEala+ ++l+lh+ll + sle+ +++ +L+++ Itr_sc000322.1_g00012.1 207 ARTLTDEAEKLDIPFQFTP-IVTHLETLDFQQLRVKTGEALAITSSLKLHTLLahnhepgknpnpqrlGDINSLENhKIKGFLDAI 291 *******************.799******************************************9994444444446899***** PP GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 ++lsPk+vv++eqe++hn+e++++r++e+l+yy+a+fd+le++lpr+s++r k E+ llg+ei+n++aceg er+erhe+l kW Itr_sc000322.1_g00012.1 292 RGLSPKIVVISEQESNHNGETLMQRLSESLHYYAAFFDCLESTLPRTSSDRLKAEKLLLGEEIKNIIACEGIERKERHEKLDKWFW 377 ************************************************************************************** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r++++GF +vpls++a+ qa++ l+ + dgy+v+ee+g++v++W+dr+L+svS+Wr Itr_sc000322.1_g00012.1 378 RFGSSGFWNVPLSYYAMLQARRYLQSCRCDGYNVKEENGCVVICWQDRALFSVSCWR 434 ********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.4 | 15 | 414 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-129 | 41 | 434 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MFQDNDGSSS ITSLSPRMPA GFGSLSHWFK ELKPEERGLY LIHLLLTCAN HVAAGALDSA 60 NVALDQISHL ASPDGDTMQR IASYFAEALA DRILRSWPGL YKALHSTRLP VLPDQVTAKK 120 MLYDLFPFLK VHGAGLSNPV QVAFMVTNQA IIEAMEGEKL VHIIDLNAVE PTQWRPLLRD 180 LSARPEGPPH LRITGVHPHR EPLDQMARTL TDEAEKLDIP FQFTPIVTHL ETLDFQQLRV 240 KTGEALAITS SLKLHTLLAH NHEPGKNPNP QRLGDINSLE NHKIKGFLDA IRGLSPKIVV 300 ISEQESNHNG ETLMQRLSES LHYYAAFFDC LESTLPRTSS DRLKAEKLLL GEEIKNIIAC 360 EGIERKERHE KLDKWFWRFG SSGFWNVPLS YYAMLQARRY LQSCRCDGYN VKEENGCVVI 420 CWQDRALFSV SCWRCRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-66 | 29 | 436 | 7 | 381 | Protein SCARECROW |
5b3h_A | 2e-66 | 29 | 436 | 6 | 380 | Protein SCARECROW |
5b3h_D | 2e-66 | 29 | 436 | 6 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157864.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A484N6A0 | 0.0 | A0A484N6A0_9ASTE; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011839 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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