PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000318.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 20969.7 Da PI: 5.2429 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 28.2 | 5.3e-09 | 59 | 97 | 60 | 98 |
DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelallk 98 sl+yeA r+ +Pv+Gavg++ +++++++q+++e++l++ Itr_sc000318.1_g00003.1 59 SLLYEAAGRTVNPVNGAVGLLGSGKWHVCQAAVETVLRG 97 9********************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 5.4E-5 | 59 | 94 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGVEFLEKDA AIPVFSGPAY TGYRAPTLRA TPPSSLPSSL AAPASCPSSP PSPRTKGLSL 60 LYEAAGRTVN PVNGAVGLLG SGKWHVCQAA VETVLRGGEL RPIPEFLGGV ADCDEGSDCT 120 AQKLSTTLPD GSSKGLKVAA DLDLSLTPGF QASHTPLPGK QRWPPRTLSM NSEESITTTT 180 TCFEGGFGIG DQGGVEPKLL NLF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195381.1 | 1e-61 | PREDICTED: LOB domain-containing protein 37-like | ||||
Refseq | XP_019195382.1 | 1e-61 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SZE8 | 5e-26 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A1S4AJK0 | 2e-47 | A0A1S4AJK0_TOBAC; LOB domain-containing protein 37-like | ||||
STRING | XP_009626676.1 | 2e-47 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-24 | LOB domain-containing protein 37 |