PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000317.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 454aa    MW: 50689.8 Da    PI: 5.7545
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000317.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.32.5e-89554512373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaal 81 
                              ++lL++cA+a++s+d++laq++L+ l+++a+pdgd++qRl++ f++AL ar a   s+++k l++ ++ +         ++++++ 
  Itr_sc000317.1_g00015.1  55 EQLLVHCANAIESNDATLAQQILWVLNNIATPDGDSNQRLTSAFLRALIARAAM--SGTCKLLAAMADLHPGlnlnmmDTHRFSII 138
                              79*************************************************998..444444433222211122344433444444 PP

                     GRAS  82 kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetg 162
                              +l  f++++P+++f++ +aN aI +aveg + vHi+D++ ++++Q p+L++a+a+Rpegpp +++T  ++++++      ++e +g
  Itr_sc000317.1_g00015.1 139 ELasFVDLTPWYRFGFTAANAAIIDAVEGYSVVHIVDLSSTHCMQIPTLIDAIAARPEGPPLIKLTLAAAADEFppmLDLSYEDLG 224
                              4467**************************************************************9999888898888999**** PP

                     GRAS 163 erLakfAeelgvpfefnvl.......vakrledleleeL.rvkp.gEalaVnlvlqlhrll..........desvsleserdevLk 229
                               +L +fA++ +v+++f+v+        ++ +++l+l++L r  + gEal++n++++lh+++          +++ + +s r+ +Lk
  Itr_sc000317.1_g00015.1 225 VKLVNFARSRNVELNFTVVpstpsdgFSSLIQQLRLQNLvRA-EnGEALVINCHMMLHYIPdetlyenshsQSQSAASSFRTMFLK 309
                              ******************988766655556666677776344.26****************888888877544444444899**** PP

                     GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                               ++sl P+++ v++++ad +s++++ r+ +a++y +  +d++++ lpr s++r+++E+  + ++++nv+a+eg +r+er e + +W
  Itr_sc000317.1_g00015.1 310 SIRSLVPTILLVIDEDADFTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAN-ICWKVENVIAQEGVQRVERLEPKTRW 394
                              ***********************************************************.************************** PP

                     GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               +rl++a F+ vp+s++ ++++k +l +++  g+ ++ e++ +vl+Wk++++v+++aW
  Itr_sc000317.1_g00015.1 395 VQRLRNANFRGVPFSDDGVSEVKNMLDEHA-AGWGLKREDDDVVLTWKGHNVVFATAW 451
                              ******************************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.83428433IPR005202Transcription factor GRAS
PfamPF035148.8E-8755451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MMQFTETLPA PSHQISPFSS LVTNKNQVHR TRPWPGFPTS SKNLGTSIGD ANCMEQLLVH  60
CANAIESNDA TLAQQILWVL NNIATPDGDS NQRLTSAFLR ALIARAAMSG TCKLLAAMAD  120
LHPGLNLNMM DTHRFSIIEL ASFVDLTPWY RFGFTAANAA IIDAVEGYSV VHIVDLSSTH  180
CMQIPTLIDA IAARPEGPPL IKLTLAAAAD EFPPMLDLSY EDLGVKLVNF ARSRNVELNF  240
TVVPSTPSDG FSSLIQQLRL QNLVRAENGE ALVINCHMML HYIPDETLYE NSHSQSQSAA  300
SSFRTMFLKS IRSLVPTILL VIDEDADFTS NNLVCRLRSA FNYLWIPYDT VDTFLPRGSK  360
QRQWYEANIC WKVENVIAQE GVQRVERLEP KTRWVQRLRN ANFRGVPFSD DGVSEVKNML  420
DEHAAGWGLK REDDDVVLTW KGHNVVFATA WVPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-484945482475Protein SHORT-ROOT
5b3h_B6e-494945428421Protein SHORT-ROOT
5b3h_E6e-494945428421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155015.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-180SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A061DGZ90.0A0A061DGZ9_THECC; SCL domain class transcription factor
STRINGEOX916400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein