PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000317.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 23663.8 Da PI: 7.6863 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.1 | 1.8e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C+l+ ++ +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+Gavg+++ Itr_sc000317.1_g00013.1 2 SCNGCRVLRKGCSENCILRTCLqwiesAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLLW 87 6*********************9999777889****************************************************** PP DUF260 82 klqqqleqlkaelall 97 +++++++q+++e++l+ Itr_sc000317.1_g00013.1 88 TGNWHVCQAAVETVLR 103 **********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.495 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR TCLQWIESAE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALQPI PGGAEASECT 120 DTLKLQDPAQ NARSKVQKRR RLPDGPPSVL QLADLDLSLN PGFQGFHPKG YGNTSPAPEK 180 RRPGTPSMNS EESVTTTCFD SQFAGAGDQD GGEPKLLSLF N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 141 | KRRRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019155042.1 | 1e-151 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 2e-78 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A1S4AJK0 | 1e-114 | A0A1S4AJK0_TOBAC; LOB domain-containing protein 37-like | ||||
STRING | XP_009626676.1 | 1e-115 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 7e-81 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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